PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g116270.1 | ||||||||
Common Name | MTR_7g116270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | Whirly | ||||||||
Protein Properties | Length: 227aa MW: 25175.8 Da PI: 9.5507 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 193.4 | 3.4e-60 | 52 | 186 | 1 | 137 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkal 94 svyk+kaa+++ + +ptf++ldsg+l+++r+G++++ +++a++erkydWek+q falsatev++l+ +++++sceffhdp++k+sn+G+vrk+l Medtr7g116270.1 52 SVYKGKAAFSLSPCLPTFTKLDSGALVVDRHGSIMMSFMPAIGERKYDWEKRQIFALSATEVGSLIAIGPQDSCEFFHDPSMKSSNAGQVRKSL 145 79******************************************************************************************** PP Whirly 95 kvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137 +++P+++ G+fv+lsv ns+++++++fsvPv+ aefav++++ Medtr7g116270.1 146 SIKPHSN--GYFVSLSVVNSVLNTKDNFSVPVTTAEFAVMKTA 186 ****986..7*******************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 4.0E-74 | 40 | 206 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 6.51E-63 | 44 | 207 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 5.0E-58 | 53 | 185 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MVPKMLKFSR MLHSSSRNHL LEVLYARDFS TATNNNYSAK GYTSDRIFAP YSVYKGKAAF 60 SLSPCLPTFT KLDSGALVVD RHGSIMMSFM PAIGERKYDW EKRQIFALSA TEVGSLIAIG 120 PQDSCEFFHD PSMKSSNAGQ VRKSLSIKPH SNGYFVSLSV VNSVLNTKDN FSVPVTTAEF 180 AVMKTACSFA LPHIMGWDRL TNQQSSGTVS FQPKMNSQIL DLEWEK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4kop_A | 2e-86 | 44 | 203 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_B | 2e-86 | 44 | 203 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_C | 2e-86 | 44 | 203 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_D | 2e-86 | 44 | 203 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.14110 | 0.0 | root| seed |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g116270.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT136833 | 0.0 | BT136833.1 Medicago truncatula clone JCVI-FLMt-6C3 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003626470.1 | 1e-170 | single-stranded DNA-binding protein WHY2, mitochondrial | ||||
Swissprot | D9J034 | 9e-91 | WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | G7L2W4 | 1e-168 | G7L2W4_MEDTR; Putative transcription factor ssDNA-binding-TF family | ||||
STRING | AES82688 | 1e-169 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11383 | 33 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 2e-84 | WHIRLY 2 |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g116270.1 |
Entrez Gene | 11433338 |
Publications ? help Back to Top | |||
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