PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr7g115550.1 | ||||||||
Common Name | MTR_7g115550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 1005aa MW: 113524 Da PI: 4.7795 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.1 | 1e-13 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l Medtr7g115550.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 32.8 | 1.7e-10 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l Medtr7g115550.1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.008 | 2 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.9E-18 | 5 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.18E-12 | 10 | 53 | No hit | No description |
Pfam | PF13921 | 4.7E-13 | 10 | 70 | No hit | No description |
SuperFamily | SSF46689 | 1.15E-20 | 33 | 107 | IPR009057 | Homeodomain-like |
CDD | cd11659 | 3.31E-30 | 55 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-14 | 57 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.7E-13 | 58 | 105 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.921 | 58 | 107 | IPR017930 | Myb domain |
Pfam | PF11831 | 2.9E-59 | 406 | 655 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009870 | Biological Process | defense response signaling pathway, resistance gene-dependent | ||||
GO:0010204 | Biological Process | defense response signaling pathway, resistance gene-independent | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1005 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDTACVKD DNYEPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TKGKKAKRKA REKQLEEARR 180 LASLQKKREL KAAGIDIRQR RRKRRGIDYN AEIPFEKRPP PGYFDVADED REVEQPAFPT 240 TIEELEGKRR IDVEAQLRKQ DVARNKIAER QDAPAAILHA NKLNDPETVR KRSKLMLPPP 300 QISDQELDEI AKLGYASDLV GSEELTEGSS ATRALLPNYP QTPNQAKTPL RTPQRTPASK 360 GDAIMMEAEN LARLRESQTP LLGGENPELH PSDFSGVTPK KKEIHTPNPL LTPSATPGSA 420 GLTPRSGMTP ARDGFSFGMT PKGTPLRDEL HINEDMEMRD SAKLELRRQA DMKKSLRSGL 480 SSLPQPKNEY QIVMQPIQED VEEPEEKIEE DMSDRMAREK AEEEARQQAL LRKRSKVLQR 540 ELPRPPPASL ELIRNSLIRA DGDKSSFVPP TPIEQADEMI RKELLALLEH DNAKYPLEEI 600 ANKERKKGSK RAANGPAIPV IEDYQEDEMK SADQLIKDEA QYLREAMGHE NDSLEEFVEA 660 HTTCINDLMY FDTRNAYGLS SVAGNAEKLA ALQNEFENVR SKLDDGKEKL IRLEKKVTTF 720 TQGYEMRSKK GLWPQIEATF KQMDVAATEF ECFQALKKQE QSAASHRINN LWSEVQKQKE 780 LEKILQKRYG DLTTELERTQ NVMEHFRVQA QQKEEIEAKN HAQEEVQAQQ KEEIEAKNHA 840 IEEVQAQQQE ETEAKNHVLE STEATADEIN VQGTENSEAV PLSADQQIAT MQDQATSSSK 900 IDMDVDSSEA QMTDSTGVTL PDAPVAEDGH SNVLEDKNVE SYIENSETTV DMSAAVEIKS 960 NEGNEEGQDV GNPDEIMEAS NQPDNSITPL DDMQVADGKG DEAN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 2 | 797 | 3 | 796 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 797 | 3 | 796 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 797 | 3 | 796 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 797 | 3 | 796 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 797 | 3 | 796 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 797 | 3 | 796 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 797 | 3 | 796 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 797 | 3 | 796 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 797 | 3 | 796 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 797 | 3 | 796 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 797 | 3 | 796 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 797 | 3 | 796 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 185 | 204 | KKRELKAAGIDIRQRRRKRR |
2 | 198 | 204 | QRRRKRR |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mtr.9056 | 0.0 | glandular trichome| root |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed extensively in shoot and root meristems. {ECO:0000269|PubMed:8917598}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00028 | SELEX | Transfer from AT1G09770 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr7g115550.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT053653 | 0.0 | BT053653.1 Medicago truncatula clone MTYFT1G-M-13 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013450559.1 | 0.0 | cell division cycle 5-like protein isoform X1 | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | A0A072U4G1 | 0.0 | A0A072U4G1_MEDTR; Cell division control protein, putative | ||||
STRING | XP_004494735.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4072 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr7g115550.1 |
Entrez Gene | 25499707 |
Publications ? help Back to Top | |||
---|---|---|---|
|