PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g115530.2 | ||||||||
Common Name | MTR_7g115530 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | G2-like | ||||||||
Protein Properties | Length: 329aa MW: 36386.4 Da PI: 4.9729 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 108.6 | 3.2e-34 | 218 | 272 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rW+peLHe+Fveav+qLGGsekAtPk +l+lm+v+gLt++hvkSHLQkYR+ Medtr7g115530.2 218 KPRMRWSPELHEAFVEAVNQLGGSEKATPKGVLNLMNVEGLTIYHVKSHLQKYRT 272 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.691 | 215 | 275 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.6E-18 | 216 | 272 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.0E-32 | 216 | 274 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-24 | 218 | 272 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.6E-10 | 220 | 271 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 8.5E-10 | 305 | 325 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MPSSSSPVLP SLMESNYMKP PDSFNCSPVR SLTANPASLQ ATSSYPIRSV RPVFSTNAEC 60 PGGVPFPPVS QHDRQYQDSP FTSQALGDNV SSEIHSATFT SHLQENDDIS WGPDPLPDIL 120 GFPDIFSVQH DQVENSACYM NEDNVKKTDF GEWVEQLMTS DDSVNPNWSQ LLGDDNVVEP 180 TQKAMHVSQK QHTSSGEVNN LCNPASASAS ASTASQTKPR MRWSPELHEA FVEAVNQLGG 240 SEKATPKGVL NLMNVEGLTI YHVKSHLQKY RTARYKPESP EETSEKKMSS IEEMKSLDLK 300 TSKGITEALR LQMELQKRLH EQLEVHYC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-31 | 218 | 276 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-31 | 218 | 276 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-31 | 218 | 276 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-31 | 218 | 276 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-31 | 218 | 276 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-31 | 218 | 276 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-31 | 218 | 276 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-31 | 218 | 276 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.12179 | 0.0 | leaf| pod| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g115530.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013450552.1 | 0.0 | protein PHR1-LIKE 1 | ||||
Refseq | XP_024626375.1 | 0.0 | protein PHR1-LIKE 1 | ||||
TrEMBL | A0A072U5C4 | 0.0 | A0A072U5C4_MEDTR; Myb-like transcription factor family protein | ||||
STRING | XP_004494732.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G29000.2 | 6e-61 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g115530.2 |
Entrez Gene | 25499705 |
Publications ? help Back to Top | |||
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