PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr7g114860.1

Common Name

MTR_7g114860

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

Trihelix

Protein Properties

Length: 484aa MW: 55781.3 Da PI: 6.7997

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr7g114860.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	29.4	2e-09	121	177	2	61
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkry 61 Wt++e l+L ++++ +++ + ++ W++vs+k++e g+++s++ Ckek+e n + Medtr7g114860.1 121 WTNHELLVLFKITSTIHNFFPDQ---LITWDHVSSKLAELGIKKSAQNCKEKFEHENASF 177 ***************999987...789***********************988766 PP
2	trihelix	91.4	9.7e-29	381	474	1	86
trihelix 1 rWtkqevlaLiearr......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikeg..ekkrtsessstcpyfdqle 86 rW+++evlaLi++++ + +++++ ++ k+plWe++s+ m e g++rs+k+Ckekwen+nk++kk+k++ +kk++s +s+tcpyf+ql Medtr7g114860.1 381 RWPRDEVLALINLKSttsvinRSNNNVEGNSNKGPLWERISEGMFELGYKRSAKRCKEKWENINKYFKKTKDIvvNKKKRSMDSRTCPYFHQLS 474 8************665443334444446799***********************************7447777899********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	78	117	176	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	5.204	119	171	IPR017877	Myb-like domain
SMART	SM00717	0.0037	378	446	IPR001005	SANT/Myb domain
Pfam	PF13837	7.6E-19	379	475	No hit	No description
PROSITE profile	PS50090	7.015	379	444	IPR017877	Myb-like domain
CDD	cd12203	2.28E-24	380	451	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MHVEYSSRAA LVALANMLDE GEHFEFEQLS STTTTSLLPS SSSSSSVANI NNTFHHIPLI 60 PSTSTSNSHD QFPLQTQINL FHPSILSLPH HSPNTTTFNS NSNSINFQIQ IPPPLIIDSS 120 WTNHELLVLF KITSTIHNFF PDQLITWDHV SSKLAELGIK KSAQNCKEKF EHENASFFPR 180 FVSELQDLYQ GGGFSVDENT QLEEDDRLET KQCDDDDDKV RMEKSKNKKR KRRRDRFEML 240 KSFCETVVNK IIAQQEEIHN KLLEDMLKRD QEKLDREETW KKQEIERMNM MVQEQQAIAS 300 DRQANIIEFL NKYLATGYSS SSSTQLHPQN PNNPSNNLES KTPFSNVIAD QNPSSSDTEY 360 SNSTSTLVVP TIMEKLEDRR RWPRDEVLAL INLKSTTSVI NRSNNNVEGN SNKGPLWERI 420 SEGMFELGYK RSAKRCKEKW ENINKYFKKT KDIVVNKKKR SMDSRTCPYF HQLSSLYNQQ 480 QEK*

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MHVEYSSRAA LVALANMLDE GEHFEFEQLS STTTTSLLPS SSSSSSVANI NNTFHHIPLI  60
PSTSTSNSHD QFPLQTQINL FHPSILSLPH HSPNTTTFNS NSNSINFQIQ IPPPLIIDSS  120
WTNHELLVLF KITSTIHNFF PDQLITWDHV SSKLAELGIK KSAQNCKEKF EHENASFFPR  180
FVSELQDLYQ GGGFSVDENT QLEEDDRLET KQCDDDDDKV RMEKSKNKKR KRRRDRFEML  240
KSFCETVVNK IIAQQEEIHN KLLEDMLKRD QEKLDREETW KKQEIERMNM MVQEQQAIAS  300
DRQANIIEFL NKYLATGYSS SSSTQLHPQN PNNPSNNLES KTPFSNVIAD QNPSSSDTEY  360
SNSTSTLVVP TIMEKLEDRR RWPRDEVLAL INLKSTTSVI NRSNNNVEGN SNKGPLWERI  420
SEGMFELGYK RSAKRCKEKW ENINKYFKKT KDIVVNKKKR SMDSRTCPYF HQLSSLYNQQ  480
QEK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	227	232	KKRKRR
2	227	233	KKRKRRR
3	228	233	KRKRRR
4	229	233	RKRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr7g114860.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003626419.1	0.0	trihelix transcription factor GTL2
Swissprot	Q8H181	1e-63	GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBL	G7L1T9	0.0	G7L1T9_MEDTR; Myb/SANT-like DNA-binding domain protein
STRING	AES82637	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5043	33	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28300.1	1e-56	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Medtr7g114860.1
Entrez Gene	11434200

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]