PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g110830.1 | ||||||||
Common Name | MTR_7g110830 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB | ||||||||
Protein Properties | Length: 368aa MW: 41559.3 Da PI: 5.0781 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.3 | 1.6e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G g+W+++++ g+ R++k+c++rw +yl Medtr7g110830.1 14 KGLWSPEEDEKLLNHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.2 | 1.1e-14 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +++eE+ l+++++ lG++ W+ Ia+ ++ gRt++++k+ w++ Medtr7g110830.1 67 RGTFSQEEENLIIELHSVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110 899*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-28 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.724 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.14E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.74E-11 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.773 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.1E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-13 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.41E-9 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MGRHSCCYKQ KLRKGLWSPE EDEKLLNHIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SQEEENLIIE LHSVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLRQKG 120 IDPVTHKPLS EVENVDEEEG KTRSQEKTAE ISESDELNIV RSESTSKSDA VSYEPKQSSI 180 VLKGYATEME VEGSCSNYLM GNYPIQMNYT STDNIPNNPN SSHWFNQTGL KPFDMNSEFT 240 STSNIMSILP QTNTSFLPNA FCYKPSEDVS MSSSSFPMKN SILSSWGITD CDTSIKENQT 300 EEEEEEAKWN EYLHNPMLML QNQASESLCN EIKPDTNLGP DGLGDILPHS KQQESSQSYN 360 IAAFGQV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-29 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 117 | LKKKLRQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.19352 | 0.0 | flower| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g110830.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT052849 | 0.0 | BT052849.1 Medicago truncatula clone MTYFL_FM_FN_FO1G-P-4 unknown mRNA. | |||
GenBank | BT147477 | 0.0 | BT147477.1 Medicago truncatula clone JCVI-FLMt-12D24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003626082.1 | 0.0 | transcription factor MYB61 | ||||
TrEMBL | B7FL77 | 0.0 | B7FL77_MEDTR; Myb transcription factor MYB64 | ||||
STRING | AES82300 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1083 | 33 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01680.3 | 2e-92 | myb domain protein 55 |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g110830.1 |
Entrez Gene | 11432542 |
Publications ? help Back to Top | |||
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