PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g110720.2
Common NameMTR_7g110720
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 407aa    MW: 44482 Da    PI: 7.0383
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g110720.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.4e-31189247259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
  Medtr7g110720.2 189 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDKTILITTYEGNHNHP 247
                      7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-33174249IPR003657WRKY domain
SuperFamilySSF1182906.41E-28182249IPR003657WRKY domain
PROSITE profilePS5081129.964183249IPR003657WRKY domain
SMARTSM007747.7E-37188248IPR003657WRKY domain
PfamPF031069.8E-27190247IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MENHHHRELS FLSSSGDFLH NNSIDPPIKE MDFFSSSPNK NNKEDDLDQH GSIIKEVSPL  60
PTLLLTHHDP VNTGLNLMCS SAAVSKEENL ENSETEMSIL ESELRRVQEE NHKLRIMLEQ  120
ITKSYSQLQA QLFITLQKQK PNHGQACPHD HPAEDSSHSS KLEEPTQDLI PFKKARVSIR  180
ARSEAPLISD GCQWRKYGQK MAKGNPCPRA YYRCTMAVGC PVRKQVQRCA EDKTILITTY  240
EGNHNHPLPP AATAIAHTTS AAAAMLLSSS TSSTLRKESA TGYLSNSFPY ATMATSTLSA  300
SQPFPTITLD FTQNHNLSMH HNRVPLPLFF SHKLPPLLQL GQPPPSSMVE SVSAAISSDP  360
NFTTALAAAI SSIIGPQRSG DGNNNLAGVV PGSPQLPQSC TTFSTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-22179249877Probable WRKY transcription factor 4
2lex_A5e-22179249877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00115ampDAPTransfer from AT4G01720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g110720.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1397450.0AC139745.35 Medicago truncatula clone mth2-17d15, complete sequence.
GenBankAC1758290.0AC175829.3 Medicago truncatula chromosome 7 BAC clone mth2-24p18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013450420.10.0probable WRKY transcription factor 47 isoform X2
SwissprotQ9ZSI79e-84WRK47_ARATH; Probable WRKY transcription factor 47
TrEMBLA0A072U5P60.0A0A072U5P6_MEDTR; WRKY1b transcription factor
STRINGAES822910.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.12e-75WRKY family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]