PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g110720.1 | ||||||||
Common Name | MTR_7g110720 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | WRKY | ||||||||
Protein Properties | Length: 434aa MW: 47471.2 Da PI: 6.7609 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98 | 5.9e-31 | 216 | 274 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+ Medtr7g110720.1 216 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDKTILITTYEGNHNHP 274 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.6E-33 | 201 | 276 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.06E-28 | 209 | 276 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.964 | 210 | 276 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.7E-37 | 215 | 275 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-26 | 217 | 274 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MENHHHRELS FLSSSGDFLH NNSIDPPIKE MDFFSSSPNK NNKEDDLDQH GSIIKEVSPL 60 PTLLLTHHDP VNTGLNLMCS SAAVSKEENL ENSETEMSIL ESELRRVQEE NHKLRIMLEQ 120 ITKSYSQLQA QLFITLQKQK PNHGQNMEEN HGMVSEQIFL NNNNASVSDG KQACPHDHPA 180 EDSSHSSKLE EPTQDLIPFK KARVSIRARS EAPLISDGCQ WRKYGQKMAK GNPCPRAYYR 240 CTMAVGCPVR KQVQRCAEDK TILITTYEGN HNHPLPPAAT AIAHTTSAAA AMLLSSSTSS 300 TLRKESATGY LSNSFPYATM ATSTLSASQP FPTITLDFTQ NHNLSMHHNR VPLPLFFSHK 360 LPPLLQLGQP PPSSMVESVS AAISSDPNFT TALAAAISSI IGPQRSGDGN NNLAGVVPGS 420 PQLPQSCTTF STN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-22 | 206 | 276 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 4e-22 | 206 | 276 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00115 | ampDAP | Transfer from AT4G01720 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g110720.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC139745 | 0.0 | AC139745.35 Medicago truncatula clone mth2-17d15, complete sequence. | |||
GenBank | AC175829 | 0.0 | AC175829.3 Medicago truncatula chromosome 7 BAC clone mth2-24p18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003626073.1 | 0.0 | probable WRKY transcription factor 47 isoform X1 | ||||
Swissprot | Q9ZSI7 | 8e-87 | WRK47_ARATH; Probable WRKY transcription factor 47 | ||||
TrEMBL | G7KUM9 | 0.0 | G7KUM9_MEDTR; Putative transcription factor WRKY family | ||||
STRING | AES82291 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10439 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01720.1 | 9e-79 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g110720.1 |
Entrez Gene | 11431585 |
Publications ? help Back to Top | |||
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