PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g109600.1
Common NameMTR_7g109600
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 266aa    MW: 30053.4 Da    PI: 4.9249
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g109600.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.53.8e-3053111259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC++  gC++kk+vers++d ++++itY+++Hnh+
  Medtr7g109600.1  53 SDFWSWRKYGQKPIKGSPYPRGYYRCSTCkGCSAKKQVERSSTDASLLIITYTSTHNHP 111
                      699***********************9877****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-3143113IPR003657WRKY domain
PROSITE profilePS5081131.29547113IPR003657WRKY domain
SuperFamilySSF1182907.72E-2648113IPR003657WRKY domain
SMARTSM007741.5E-3452112IPR003657WRKY domain
PfamPF031061.1E-2454111IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDSNASPKLE SETSLELKPE SQVSKKRKMV EKTVVTVRIG ENVSKVKNEG LPSDFWSWRK  60
YGQKPIKGSP YPRGYYRCST CKGCSAKKQV ERSSTDASLL IITYTSTHNH PDPTALSSTT  120
NLAQQPKESK TETTKDLPVT SKEENQEQKQ VEEEINSNKS TVSSSDQVTN EENFHYLQST  180
THCSEDIIID QEDPFKLNIE KSHIDKIDLL LEEEPLCYAQ LKNMSASKSE EFDFFDELEE  240
LPMSSSILHF TRSIFSDERI PVAPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B9e-23531141780Disease resistance protein RRS1
5w3x_D9e-23531141780Disease resistance protein RRS1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.77840.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g109600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1404310.0BT140431.1 Medicago truncatula clone JCVI-FLMt-17K15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003625977.10.0probable WRKY transcription factor 35
TrEMBLG7KSU40.0G7KSU4_MEDTR; Putative transcription factor WRKY family
STRINGAES821950.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97083241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-36WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]