PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g109250.2
Common NameMTR_7g109250
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 328aa    MW: 37293.2 Da    PI: 6.6427
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g109250.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-12191216126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      y   +C+++ +tG+C yGd+CkF+H+
  Medtr7g109250.2 191 YQPDICKDYKETGYCGYGDSCKFMHD 216
                      67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-9189221IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7190217IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878190218IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-12191221IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-10191216IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.103.6E-13264309IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139205.4E-8267309No hitNo description
SuperFamilySSF578509.24E-13267310No hitNo description
SMARTSM001849.9E-4268305IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.188268306IPR001841Zinc finger, RING-type
CDDcd001621.89E-7268309No hitNo description
PROSITE patternPS005180283292IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEDSEAKSTE NQQTEQVCSF FRKPVNRKNM RKRTIENEDN ENDSNNEESL MHVQKKNTKA  60
DNKLFFSTGS SKSSASAKPN EESEKPSFHF ESSKEIQVQH DSKATATLET ETDFSRDARA  120
IRERALKQAT ESLKGKSTSS EDVKLYKGIN NYTDHKAGFR REQTIASEKA GGSHGPLRAS  180
AHIRVSARFD YQPDICKDYK ETGYCGYGDS CKFMHDRGDY KSGWQMEKEW DEAEKARKMR  240
LATGEDAEEE GASLNDEDDD EDALPFACFI CRNPFVDPVS TKCKHYFCEH CALKHHAKNK  300
KCFVCNQPTL GIFNVAHEIR KKMAEDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M6e-6793236317RING finger protein 113A
5z58_M6e-6793236317RING finger protein 113A
6ff4_t6e-6793236317RING finger protein 113A
6ff7_t6e-6793236317RING finger protein 113A
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.216062e-33root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g109250.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1453290.0AC145329.35 Medicago truncatula clone mth2-8i21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013450398.10.0zinc finger CCCH domain-containing protein 1 isoform X2
RefseqXP_024626416.10.0zinc finger CCCH domain-containing protein 1 isoform X2
SwissprotQ8GX841e-163C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A072U5020.0A0A072U502_MEDTR; Putative transcription factor C3H family
STRINGAES821620.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-155C3H family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]