PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g109250.1
Common NameMTR_7g109250
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 388aa    MW: 44366.7 Da    PI: 7.5508
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g109250.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.93e-12251276126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      y   +C+++ +tG+C yGd+CkF+H+
  Medtr7g109250.1 251 YQPDICKDYKETGYCGYGDSCKFMHD 276
                      66789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.49E-9249281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878250278IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7250277IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-10251276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-12251281IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.104.7E-13324369IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.52E-12327370No hitNo description
PfamPF139206.8E-8327368No hitNo description
SMARTSM001849.9E-4328365IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.188328366IPR001841Zinc finger, RING-type
CDDcd001621.16E-7328369No hitNo description
PROSITE patternPS005180343352IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MLHGSVIVSQ KSNRHIILPY WFRRLWFYAT LLVFLPLIGG LAPFAALSQW NNHFLFKLFT  60
MEDSEAKSTE NQQTEQVCSF FRKPVNRKNM RKRTIENEDN ENDSNNEESL MHVQKKNTKA  120
DNKLFFSTGS SKSSASAKPN EESEKPSFHF ESSKEIQVQH DSKATATLET ETDFSRDARA  180
IRERALKQAT ESLKGKSTSS EDVKLYKGIN NYTDHKAGFR REQTIASEKA GGSHGPLRAS  240
AHIRVSARFD YQPDICKDYK ETGYCGYGDS CKFMHDRGDY KSGWQMEKEW DEAEKARKMR  300
LATGEDAEEE GASLNDEDDD EDALPFACFI CRNPFVDPVS TKCKHYFCEH CALKHHAKNK  360
KCFVCNQPTL GIFNVAHEIR KKMAEDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M1e-65693836317RING finger protein 113A
5z58_M1e-65693836317RING finger protein 113A
6ff4_t1e-65693836317RING finger protein 113A
6ff7_t1e-65693836317RING finger protein 113A
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.216062e-33root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g109250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1453290.0AC145329.35 Medicago truncatula clone mth2-8i21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003625944.10.0zinc finger CCCH domain-containing protein 1 isoform X1
RefseqXP_024626415.10.0zinc finger CCCH domain-containing protein 1 isoform X1
SwissprotQ8GX841e-161C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLG7KSR10.0G7KSR1_MEDTR; RING zinc finger protein, putative
STRINGAES821620.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-154C3H family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]