PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g108868.1 | ||||||||
Common Name | MTR_7g108868, MTR_8g058593 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | C3H | ||||||||
Protein Properties | Length: 186aa MW: 20914.4 Da PI: 6.5057 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 39.3 | 1.1e-12 | 80 | 105 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y lC++f +tG+C yGd+CkF H+ Medtr7g108868.1 80 YQPDLCKDFKETGYCGYGDSCKFLHD 105 6789*********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 7.06E-10 | 77 | 110 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.45 | 79 | 107 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.8E-8 | 79 | 106 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.9E-14 | 80 | 110 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-10 | 80 | 105 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MFTNLKCYKY NGLFFSTAKP NEASKKLSFH FESSKEIQVQ HDSKATATLE TETSLEGTGG 60 STHGPLRPST HIRVSSRIDY QPDLCKDFKE TGYCGYGDSC KFLHDRTDYK SGWQLEKEWN 120 ETEKRRKQAA YCLKKYATYD NLLDMAIGHM TLLCLPIIDQ EVSKPGEQDA AEATTESKVE 180 ATPST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5z56_M | 5e-25 | 58 | 121 | 175 | 238 | RING finger protein 113A |
5z58_M | 5e-25 | 58 | 121 | 175 | 238 | RING finger protein 113A |
6ff4_t | 5e-25 | 58 | 121 | 175 | 238 | RING finger protein 113A |
6ff7_t | 5e-25 | 58 | 121 | 175 | 238 | RING finger protein 113A |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.21606 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g108868.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC145329 | 6e-31 | AC145329.35 Medicago truncatula clone mth2-8i21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024628724.1 | 1e-87 | zinc finger CCCH domain-containing protein 1 | ||||
Swissprot | Q9FNG6 | 9e-43 | C3H51_ARATH; Zinc finger CCCH domain-containing protein 51 | ||||
TrEMBL | A0A072U5J1 | 1e-137 | A0A072U5J1_MEDTR; Zinc finger C-x8-C-x5-C-x3-H type protein | ||||
STRING | AES82146 | 9e-97 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01350.1 | 1e-36 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g108868.1 |
Entrez Gene | 25499607 | 25501210 |
Publications ? help Back to Top | |||
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