PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g108150.1
Common NameMTR_7g108150
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family CO-like
Protein Properties Length: 373aa    MW: 41581.4 Da    PI: 6.6621
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g108150.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.71.7e-061860440
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                     r C+ +++ ++ ++C+ ++  lC +C  e H+       Ht++
  Medtr7g108150.1 18 RPCDYCGHSNAVIYCRADSAKLCFSCDREVHSTnqlfskHTRS 60
                     67******99*********************668888888876 PP
2zf-B_box23.21.5e-0761103441
         zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                       +C+ +++ ++++ C + ++ +C++C  e H +      H++++
  Medtr7g108150.1  61 LICDSCDDSPATILCSTESSVFCQNCDWENH-NlslsspHERRS 103
                      69*****************************.557888887765 PP
3CCT64.14.1e-22328370143
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                      R+ allRYk+K+ktR+++K+irYesRK++AesR RvKGrF+k 
  Medtr7g108150.1 328 RDSALLRYKQKKKTRRYDKHIRYESRKVRAESRTRVKGRFAKI 370
                      899**************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.9261562IPR000315B-box-type zinc finger
SMARTSM003361.7E-131562IPR000315B-box-type zinc finger
CDDcd000214.84E-61862No hitNo description
PfamPF006433.1E-51860IPR000315B-box-type zinc finger
PROSITE profilePS501199.6758104IPR000315B-box-type zinc finger
PfamPF006436.0E-661103IPR000315B-box-type zinc finger
CDDcd000210.0010962104No hitNo description
SMARTSM003360.2963104IPR000315B-box-type zinc finger
PfamPF062036.4E-16328369IPR010402CCT domain
PROSITE profilePS5101714.574328370IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MGGSPRNPNP NPSHKLVRPC DYCGHSNAVI YCRADSAKLC FSCDREVHST NQLFSKHTRS  60
LICDSCDDSP ATILCSTESS VFCQNCDWEN HNLSLSSPHE RRSLEGFTGC PSVTELLSIL  120
GLQDIGKKSL LLPQESVGDG FVGYEIEGLS DMFVWDAPSF VSLDDLISSS PSSHNYRAME  180
VPPLPKNRKA ACGRHREEIL NQLREMTKSE PYDPEEYIPP ANLSTSFDCD VKADIVPSNE  240
WLRESSEPMY QVVPVDTSFK AHTEEISVKH SVSSVGEPHT HCNNGGTPSE PLNHCNNGGT  300
PSEYVKSETL STTSKAVPPP YELASQERDS ALLRYKQKKK TRRYDKHIRY ESRKVRAESR  360
TRVKGRFAKI DH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1336342QKKKTRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.71080.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g108150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1980070.0AC198007.2 Medicago truncatula chromosome 7 BAC clone mth2-54m23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003625866.10.0zinc finger protein CONSTANS-LIKE 13
TrEMBLG7KQZ20.0G7KQZ2_MEDTR; Putative transcription factor C2C2-CO-like family
STRINGAES820840.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70553145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.17e-89B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]