PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g106450.1
Common NameMTR_7g106450, NF-YA2
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NF-YA
Protein Properties Length: 334aa    MW: 36154.6 Da    PI: 9.8073
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g106450.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA95.56.1e-30165221158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      d p+YVNaKQy++I++RRq+Rak+   +kl +k +kpy+heSRh hA+rRpRg+gGrF
  Medtr7g106450.1 165 DGPIYVNAKQYNGIIRRRQSRAKAVLGHKL-IKRNKPYMHESRHLHAMRRPRGCGGRF 221
                      57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.5E-33163224IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.327164224IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.3E-26167221IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.3E-21167189IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.3E-21198221IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MAMQTVYLKE HEGIAHNFVG QLSSGTNNSA AAPWWSGFGS QSLYGESGGQ IKSFSLEPPM  60
SVVDQLASSK QSARGTEHVF GKGHTNHFTI FPDDFKMSGD AQKPHTAISL QSAVPDTPNR  120
FELGFGQPMI CTKYPYADQF YGLISTYGPQ IQGRIMLPLN MTSDDGPIYV NAKQYNGIIR  180
RRQSRAKAVL GHKLIKRNKP YMHESRHLHA MRRPRGCGGR FLNTKKSANG DGKTGSKVHK  240
FGGQQLQFSG SQSSELLESD VGTLNSSKET NGSSPNISGS EVTSLYSRGN HDSFTVDHLG  300
SSVLSMADMI DGGRGVIMPT KWVAAGNCCN LKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-15167226463NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.170490.0glandular trichome| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g106450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9182670.0JQ918267.1 Medicago truncatula nuclear transcription factor Y subunit A2 (NF-YA2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013450229.10.0nuclear transcription factor Y subunit A-10 isoform X1
RefseqXP_024626977.10.0nuclear transcription factor Y subunit A-10 isoform X1
TrEMBLI3TAV20.0I3TAV2_MEDTR; CCAAT-binding transcription factor
STRINGXP_004494259.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37943464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.23e-63nuclear factor Y, subunit A10
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]