PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr7g106320.3

Common Name

MTR_7g106320

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

TALE

Protein Properties

Length: 661aa MW: 72574.4 Da PI: 6.8338

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr7g106320.3	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.3	1.4e-09	378	415	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Medtr7g106320.3 378 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 415 554459******************************88 PP
2	BELL	123.1	1.2e-39	242	313	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL+++l+eV++rY+qy++q+++v+ssFe++ag+gsa+ Yt+lAl++iS++FrcLkdai++qi Medtr7g106320.3 242 ERQEIQMKKAKLITMLDEVEQRYRQYHHQMEIVVSSFEQAAGIGSARTYTALALQTISKQFRCLKDAITGQI 313 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.1E-61	167	311	IPR006563	POX domain
Pfam	PF07526	1.1E-46	172	310	IPR006563	POX domain
PROSITE profile	PS50071	12.195	356	419	IPR001356	Homeobox domain
SMART	SM00389	5.3E-9	359	423	IPR001356	Homeobox domain
CDD	cd00086	3.03E-12	359	420	No hit	No description
SuperFamily	SSF46689	6.84E-17	360	426	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.6E-29	362	425	IPR009057	Homeodomain-like
Pfam	PF05920	2.7E-18	376	415	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 661 aa Download sequence Send to blast
MATYYHGGNS EIQSSGGGGA DGLQTLVLMN PSYIQYSDAS QQQQAQQPSH ATAGNYVFLN 60 STAAENNSFS PHAPPSNTQQ FVGIPLNHQQ HQIHAHHDVV PSLHGFLPHV QYNQWNTIDP 120 NTAARDTPRA QQGLSLSLSS QPARFVSMSG GSPSPASGVT TNNNNGNPGI QILSSKYLRA 180 AHELLEEVVN VNSGVELGKK SGGGMSKVNI GESSGVGSGG DGSIIGGAEG SGKRSSELST 240 AERQEIQMKK AKLITMLDEV EQRYRQYHHQ MEIVVSSFEQ AAGIGSARTY TALALQTISK 300 QFRCLKDAIT GQIKATNKSL GEEDCFGGKI EGSRLKYVDH QLRQQRALQQ LGMIQHNAWR 360 PQRGLPERSV SVLRAWLFEH FLHPYPKDSD KHMLAKQTGL TRSQVSNWFI NARVRLWKPM 420 VEEMYVEEMK ENEQSKSNED SSMKITSSQE KALTSETEPK GYNSTQDIST SQDTPLISVS 480 RPQTSPLVGN VRNNSGFSFI GSSELEGIPQ GSPKKPRNHE LMHNPNSFID VKHNEANNEE 540 LSMKFGDDRQ NRDGYSFMGN QTNFIGGFGQ YPIGDIGRFD SEQFAPRFSS NNVSLTLGLD 600 SIQGNHQTFL PNQNIQLGRS IDISEPNEFG SINTSSPQYE SINMQNPKRF AAQLLPDFVS 660 *

Sequence ? help Back to Top

Protein Sequence Length: 661 aa Download sequence Send to blast

MATYYHGGNS EIQSSGGGGA DGLQTLVLMN PSYIQYSDAS QQQQAQQPSH ATAGNYVFLN  60
STAAENNSFS PHAPPSNTQQ FVGIPLNHQQ HQIHAHHDVV PSLHGFLPHV QYNQWNTIDP  120
NTAARDTPRA QQGLSLSLSS QPARFVSMSG GSPSPASGVT TNNNNGNPGI QILSSKYLRA  180
AHELLEEVVN VNSGVELGKK SGGGMSKVNI GESSGVGSGG DGSIIGGAEG SGKRSSELST  240
AERQEIQMKK AKLITMLDEV EQRYRQYHHQ MEIVVSSFEQ AAGIGSARTY TALALQTISK  300
QFRCLKDAIT GQIKATNKSL GEEDCFGGKI EGSRLKYVDH QLRQQRALQQ LGMIQHNAWR  360
PQRGLPERSV SVLRAWLFEH FLHPYPKDSD KHMLAKQTGL TRSQVSNWFI NARVRLWKPM  420
VEEMYVEEMK ENEQSKSNED SSMKITSSQE KALTSETEPK GYNSTQDIST SQDTPLISVS  480
RPQTSPLVGN VRNNSGFSFI GSSELEGIPQ GSPKKPRNHE LMHNPNSFID VKHNEANNEE  540
LSMKFGDDRQ NRDGYSFMGN QTNFIGGFGQ YPIGDIGRFD SEQFAPRFSS NNVSLTLGLD  600
SIQGNHQTFL PNQNIQLGRS IDISEPNEFG SINTSSPQYE SINMQNPKRF AAQLLPDFVS  660
*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	5e-16	365	423	5	63	Homeobox protein Meis2
3k2a_B	5e-16	365	423	5	63	Homeobox protein Meis2
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.13534	0.0	flower\| leaf\| pod\| root\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr7g106320.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013450217.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_024626266.1	0.0	BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	1e-168	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A072UEL8	0.0	A0A072UEL8_MEDTR; BEL1-related homeotic protein
STRING	XP_004494251.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-148	BEL1-like homeodomain 1

Link Out ? help Back to Top
Phytozome	Medtr7g106320.3
Entrez Gene	25499489

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]