PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g106320.1 | ||||||||
Common Name | MTR_7g106320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | TALE | ||||||||
Protein Properties | Length: 661aa MW: 72574.4 Da PI: 6.8338 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.3 | 1.4e-09 | 378 | 415 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Medtr7g106320.1 378 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 415 554459******************************88 PP | |||||||
2 | BELL | 123.1 | 1.2e-39 | 242 | 313 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL+++l+eV++rY+qy++q+++v+ssFe++ag+gsa+ Yt+lAl++iS++FrcLkdai++qi Medtr7g106320.1 242 ERQEIQMKKAKLITMLDEVEQRYRQYHHQMEIVVSSFEQAAGIGSARTYTALALQTISKQFRCLKDAITGQI 313 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.1E-61 | 167 | 311 | IPR006563 | POX domain |
Pfam | PF07526 | 1.1E-46 | 172 | 310 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.195 | 356 | 419 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.3E-9 | 359 | 423 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.03E-12 | 359 | 420 | No hit | No description |
SuperFamily | SSF46689 | 6.84E-17 | 360 | 426 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.6E-29 | 362 | 425 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.7E-18 | 376 | 415 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 661 aa Download sequence Send to blast |
MATYYHGGNS EIQSSGGGGA DGLQTLVLMN PSYIQYSDAS QQQQAQQPSH ATAGNYVFLN 60 STAAENNSFS PHAPPSNTQQ FVGIPLNHQQ HQIHAHHDVV PSLHGFLPHV QYNQWNTIDP 120 NTAARDTPRA QQGLSLSLSS QPARFVSMSG GSPSPASGVT TNNNNGNPGI QILSSKYLRA 180 AHELLEEVVN VNSGVELGKK SGGGMSKVNI GESSGVGSGG DGSIIGGAEG SGKRSSELST 240 AERQEIQMKK AKLITMLDEV EQRYRQYHHQ MEIVVSSFEQ AAGIGSARTY TALALQTISK 300 QFRCLKDAIT GQIKATNKSL GEEDCFGGKI EGSRLKYVDH QLRQQRALQQ LGMIQHNAWR 360 PQRGLPERSV SVLRAWLFEH FLHPYPKDSD KHMLAKQTGL TRSQVSNWFI NARVRLWKPM 420 VEEMYVEEMK ENEQSKSNED SSMKITSSQE KALTSETEPK GYNSTQDIST SQDTPLISVS 480 RPQTSPLVGN VRNNSGFSFI GSSELEGIPQ GSPKKPRNHE LMHNPNSFID VKHNEANNEE 540 LSMKFGDDRQ NRDGYSFMGN QTNFIGGFGQ YPIGDIGRFD SEQFAPRFSS NNVSLTLGLD 600 SIQGNHQTFL PNQNIQLGRS IDISEPNEFG SINTSSPQYE SINMQNPKRF AAQLLPDFVS 660 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 5e-16 | 365 | 423 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 5e-16 | 365 | 423 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.13534 | 0.0 | flower| leaf| pod| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g106320.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013450217.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_024626266.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SJ56 | 1e-168 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A072UEL8 | 0.0 | A0A072UEL8_MEDTR; BEL1-related homeotic protein | ||||
STRING | XP_004494251.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1627 | 34 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 1e-148 | BEL1-like homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g106320.1 |
Entrez Gene | 25499489 |
Publications ? help Back to Top | |||
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