PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g105370.1
Common NameMTR_7g105370
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 303aa    MW: 34898.5 Da    PI: 6.9054
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g105370.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3102.42.6e-3261162199
                      EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                      f+k ltpsdv+k++rlv+pk++ae++   ++++ ++  l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F++++ + ++
  Medtr7g105370.1  61 FEKPLTPSDVGKLNRLVIPKQHAERYfplDSEEIKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFQRHRIHPQR 154
                      99**************************9777778999************************************************76559999 PP

                      .EEEEE-S CS
               B3  92 lvvkvfrk 99 
                      l+++++r+
  Medtr7g105370.1 155 LFISWRRR 162
                      *****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.6E-4052166IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.76E-3158163IPR015300DNA-binding pseudobarrel domain
PfamPF023624.9E-2961162IPR003340B3 DNA binding domain
PROSITE profilePS5086314.19861163IPR003340B3 DNA binding domain
SMARTSM010196.5E-2361163IPR003340B3 DNA binding domain
CDDcd100172.53E-2664149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MSVNHTIQET TSLWWNQQQQ RTQQDAEEAE IEDDVVLESI MKLKTTEASS EEEEEEKEAM  60
FEKPLTPSDV GKLNRLVIPK QHAERYFPLD SEEIKGLLLS FEDESGKCWR FRYSYWNSSQ  120
SYVLTKGWSR YVKDKRLDAG DVVLFQRHRI HPQRLFISWR RRHGSNSTPP AHVSRSISSS  180
STHGNVPMGW SRELYPAHPY PTHHHPLSYH AGEGSQSQNT ATPCGNSSST SRVLRLFGVN  240
MECQPDNNIN INNINDSQTL SQDCSYNNMS STQGTAIPQF YHHLHRQPPS NPHHHMLRQQ  300
PY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A7e-51561623113B3 domain-containing transcription factor NGA1
5os9_B7e-51561623113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g105370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1389030.0BT138903.1 Medicago truncatula clone JCVI-FLMt-4I21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013450138.10.0B3 domain-containing protein At2g36080
SwissprotQ9FNI33e-68Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A072U4750.0A0A072U475_MEDTR; B3 DNA-binding domain protein
STRINGXP_004494224.11e-138(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.21e-63B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]