PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g104050.1
Common NameMTR_7g104050
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRF
Protein Properties Length: 385aa    MW: 42419.1 Da    PI: 8.6736
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g104050.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC80.51.5e-25143186144
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                      d+epgrCrRtDGKkWRC r+v++g+k+CErH+hrgr+rsrk++e
  Medtr7g104050.1 143 DPEPGRCRRTDGKKWRCARDVVAGQKYCERHMHRGRNRSRKPVE 186
                      79***************************************987 PP
2QLQ49.21.6e-1777113137
              QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                      s+F+ +Q+q+L+ Q+l+++y++ ++ vPpeLlq+i+k
  Medtr7g104050.1  77 SHFSLSQWQELELQALIFRYMLVGASVPPELLQPIKK 113
                      79*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.9E-1177113IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.9E-1278111IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.77178113IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.064143187IPR014977WRC domain
PfamPF088795.1E-22144186IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MDFPTKQWRN QQHESEKQHS TKMPKLLHPA QSQSQSHSHQ QSPALPLFLP QPNTKVTNLS  60
DSALPSNNRF PRIGMGSHFS LSQWQELELQ ALIFRYMLVG ASVPPELLQP IKKSLLHSSP  120
YFLHHYQPTA LLQSGYWGRG AMDPEPGRCR RTDGKKWRCA RDVVAGQKYC ERHMHRGRNR  180
SRKPVELPTP TSNGGGSFSA LSSISSQPLV TSSFKSPFDL HFTERSTGTK IEEKSLCESD  240
DHVGGDGRPG GQMLRHFFDD WPRSLQDSDN AENNGGSSST CLSISMPGNN NTSSSSSDVS  300
LKLSTGYGEE PCPRNENVGL VQTEQQQQQL QLNWIGGWNS GNQVSSMGGP LAEALRSSTS  360
TSSPTSVLHQ LPRCSGSQTS YIST*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269|PubMed:20023165}.
UniprotTISSUE SPECIFICITY: Strongly expressed in actively growing and developing tissues, such as roots, upper stems, and shoot tips containing the shoot apical meristem (SAM) and flower buds. Also expressed in mature flowers, but weakly expressed in mature stems and leaves. {ECO:0000269|PubMed:12974814}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g104050.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1440620.0BT144062.1 Medicago truncatula clone JCVI-FLMt-18C18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003625769.10.0growth-regulating factor 3 isoform X1
SwissprotQ8L8A71e-84GRF4_ARATH; Growth-regulating factor 4
TrEMBLG7L5Z00.0G7L5Z0_MEDTR; Growth-regulating factor
STRINGAES819870.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78953242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.12e-68growth-regulating factor 4
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Kuijt SJ, et al.
    Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
    Plant Physiol., 2014. 164(4): p. 1952-66
    [PMID:24532604]
  3. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]