PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g103390.1
Common NameMTR_7g103390
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Trihelix
Protein Properties Length: 456aa    MW: 52293 Da    PI: 6.4247
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g103390.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix781.4e-24103201186
         trihelix   1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 
                      +Wt+ +v++Li a+ +++++ ++++            +kk++W++vsk m+e+g+ +sp+qC++k+++lnkryk+++++ +k+ +++++++  +
  Medtr7g103390.1 103 KWTDTMVRLLIMAVYYIGDEAGTSElsadkkkangllQKKGKWKSVSKGMMEKGYYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQTL 196
                      7*********************998888889999999**********************************************55999**9999 PP

         trihelix  82 fdqle 86 
                      +d ++
  Medtr7g103390.1 197 LDTMD 201
                      99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.0E-22101226No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MESNGLGGGI FPNINNGFLG VENPSKQQQN HQNPHTLHHH QMVSYDQPHQ SIKQGYPYPS  60
KTNNNKPQQI NINLSDEDEP CFGADETSVG DPKRKGSPWH RMKWTDTMVR LLIMAVYYIG  120
DEAGTSELSA DKKKANGLLQ KKGKWKSVSK GMMEKGYYVS PQQCEDKFND LNKRYKRVND  180
ILGKGTACRV VENQTLLDTM DLSAKLKEEA RKLLNSKHLF FREMCAYHNS CGHGNNNLQQ  240
QSSTEAQPQQ HHHPQQQQQQ QQQQQQQCLH SSNGVGSLGM LKLKGRNGGG GEEEEDEDED  300
DEWEDDSEEE EEESGEGGGY GSKGHEEDEN IDHLRKKSRK VSSLPSQVMQ QLSSEVMSVL  360
QDGVKSCWEK KQWMKKKVVQ LGEEQVNYHV EAFEIEKQRL KWVKFSSNKE REMERQKLEN  420
ERKSLEIDRM VLLLRQKELE LQNTQQLQQQ QHSST*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.205110.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g103390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013450070.10.0probable serine/threonine-protein kinase irlF
TrEMBLA0A072U4N30.0A0A072U4N3_MEDTR; Myb/SANT-like DNA-binding domain protein
STRINGXP_004494130.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.12e-70sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]