PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr7g103340.1

Common Name

MTR_7g103340

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

HD-ZIP

Protein Properties

Length: 233aa MW: 27162.3 Da PI: 6.7979

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr7g103340.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.9	8.6e-19	61	116	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r k+ ++t++q++ Le+ F+++ +++ e++ +L+++lgL+ rq+ vWFqNrR+++k Medtr7g103340.1 61 REKKKRLTSNQIDSLEKSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWK 116 567888*************************************************9 PP
2	HD-ZIP_I/II	116.9	1.2e-37	62	154	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekk+rl+++q+ +LE+sF+ee kL+perK++l+reLglqprq+avWFqnrR R+k+kqlE+ y++Lk+++d +++e+++L++ev +L+ +lke Medtr7g103340.1 62 EKKKRLTSNQIDSLEKSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWKAKQLEHLYDVLKQEFDVVSKEKQKLQEEVMKLKGKLKE 154 69**************************************************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.71E-19	49	120	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.88	58	118	IPR001356	Homeobox domain
Pfam	PF00046	3.0E-16	61	116	IPR001356	Homeobox domain
SMART	SM00389	1.5E-16	61	122	IPR001356	Homeobox domain
CDD	cd00086	4.46E-15	61	119	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.8E-20	64	125	IPR009057	Homeodomain-like
PRINTS	PR00031	7.9E-5	89	98	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	93	116	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.9E-5	98	114	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.3E-8	118	152	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MDWNESTRPF VPHTESSLSF FYNYNNTPYS GMEMSQPSLG ETQQRLLPAM DEMNIDGNNY 60 REKKKRLTSN QIDSLEKSFQ EEIKLDPERK MKLSRELGLQ PRQIAVWFQN RRTRWKAKQL 120 EHLYDVLKQE FDVVSKEKQK LQEEVMKLKG KLKEQSGGNF RTQTYVEETV ESTSEGLRCS 180 NKPTSSSIQQ AVPDQGYNNN NNSTTFIVED FNNSVSMPPN QCHWPVLPNY YP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	118	RRTRWKAKQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Widely expressed. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr7g103340.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013450066.1	1e-174	homeobox-leucine zipper protein ATHB-22
Swissprot	Q9LZR0	1e-45	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A072U315	1e-172	A0A072U315_MEDTR; Homeobox leucine zipper protein
STRING	XP_004494126.1	1e-115	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3394	34	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	2e-47	homeobox 51

Link Out ? help Back to Top
Phytozome	Medtr7g103340.1
Entrez Gene	25499366

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]