PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g102110.1
Common NameMTR_7g102110
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 273aa    MW: 30203.7 Da    PI: 6.51
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g102110.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.72.7e-181462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+++++++G+g +W t ++++g++R++k+c++rw++yl
  Medtr7g102110.1 14 KGPWSPEEDAKLKEYIEKHGTGgNWITLPKKVGLTRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding353.3e-1169111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++  Ed+++  +++  G++ W+ Ia+++  gRt++++k++w++
  Medtr7g102110.1  69 GEFSDSEDKIICTLFASIGSR-WSIIASKLE-GRTDNDVKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.065966IPR017930Myb domain
SuperFamilySSF466895.85E-2711109IPR009057Homeodomain-like
SMARTSM007171.9E-141364IPR001005SANT/Myb domain
PfamPF002492.9E-171462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-251569IPR009057Homeodomain-like
CDDcd001671.64E-101662No hitNo description
PROSITE profilePS5129414.99567117IPR017930Myb domain
SMARTSM007176.7E-1167115IPR001005SANT/Myb domain
PfamPF002497.7E-1069111IPR001005SANT/Myb domain
CDDcd001676.35E-770113No hitNo description
Gene3DG3DSA:1.10.10.603.8E-2170117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGRSPCCDKA NVKKGPWSPE EDAKLKEYIE KHGTGGNWIT LPKKVGLTRC GKSCRLRWLN  60
YLRPNIKHGE FSDSEDKIIC TLFASIGSRW SIIASKLEGR TDNDVKNYWN TKLKKKIMSM  120
NHSVEMKPQQ VTLLSILQNS TKSSPSLSFT NSSFSYSSTS SSLLSGNSST SAAQESYISP  180
SKNNSKNQIN HVIDQGLVEE CGDATFVEQN NIDSVDYIYS EVEDSEKLMF SNAGSVNGLW  240
GENPLDYGID EIKQLISTSA STSSCNNFLF DE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24141177108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.110940.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous, with higher levels in roots, flowers, and shoot tips. Found in all cells of the shoot tips. {ECO:0000269|PubMed:16461581}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g102110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1478550.0BT147855.1 Medicago truncatula clone JCVI-FLMt-14D8 unknown mRNA.
GenBankEF4684790.0EF468479.1 Medicago truncatula MYB transcription factor MYB37 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003625681.10.0transcription factor RAX2
SwissprotQ9SJL72e-71RAX2_ARATH; Transcription factor RAX2
TrEMBLD5FFG80.0D5FFG8_MEDTR; MYB transcription factor MYB37
STRINGAES818990.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.11e-72MYB family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]