PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g100890.1
Common NameMTR_7g100890
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family S1Fa-like
Protein Properties Length: 498aa    MW: 55377.1 Da    PI: 8.0622
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g100890.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA123.47.5e-39431497470
             S1FA   4 akveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 
                      +++ ++G+nP livllv+gglll+fl+gny++yvyaqk+lPPrkkkPvskkk+k+e+lkqGv++PGe
  Medtr7g100890.1 431 KNAGSQGFNPDLIVLLVIGGLLLTFLIGNYAVYVYAQKALPPRKKKPVSKKKMKKERLKQGVSAPGE 497
                      556789************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF520471.6E-134241No hitNo description
SMARTSM003671106691IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM0036731093118IPR006553Leucine-rich repeat, cysteine-containing subtype
Gene3DG3DSA:3.80.10.102.7E-33122402IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520479.68E-28161406No hitNo description
SMARTSM00367370176202IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM0036739203228IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM0036713287312IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM003672.1360385IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM00367730386411IPR006553Leucine-rich repeat, cysteine-containing subtype
PfamPF046897.2E-37434497IPR006779DNA binding protein S1FA
ProDomPD0190130.001435497No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MAFGNSIPFL TSLVCSNVGS MSRQDISAIS RSFQMLEVLD LGHPNLFVDG AHPNTAKALI  60
NLSLSTPRMR EINLSSHSYI SDNLFHNLLY NWRHNLEEVF ICNCPNITHG IIFNSFSFPD  120
APPRVKSLVL SDTGLSQPNI PQPYFLNSLT TIKYSRCTHF CLGYTYHGLS DFLSRRRQIR  180
HLDLSGAPWY IHDEQIETLA DLVTDIISIN LTSCSKLTDY AVYILITTCR SLSELYMGDT  240
KVGEGSETFP EQLLLCPDNN TRLQSLSLSH QKFLNGEVML IRIASIFRNL HHLDLSRCTG  300
ISDQVIGDVL RLCREIRRLD ISNTSITSFH IGFVVLKLQQ LNISGTAFND EALMFISDCC  360
PALKVVLLNA CNSISDVGVI YLVKSCTKLQ KIGLNNCDSL SRFLVDIIIT ERPTLHGIGT  420
PISFALSDEV KNAGSQGFNP DLIVLLVIGG LLLTFLIGNY AVYVYAQKAL PPRKKKPVSK  480
KKMKKERLKQ GVSAPGE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.41284e-91flower| leaf| root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g100890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1249630.0AC124963.32 Medicago truncatula clone mth2-24f5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG7L1S50.0G7L1S5_MEDTR; DNA-binding protein S1FA
STRINGAES818160.0(Medicago truncatula)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]