PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g100100.1 | ||||||||
Common Name | MTR_7g100100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | C2H2 | ||||||||
Protein Properties | Length: 166aa MW: 18572.7 Da PI: 9.5675 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00026 | 34 | 56 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k Fs+ L H +H Medtr7g100100.1 34 YECKTCNKKFSSFQALGGHRASH 56 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 13.9 | 0.00016 | 83 | 105 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ Fs L H+r+H Medtr7g100100.1 83 HECSICGMGFSLGQALGGHMRKH 105 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 6.2E-11 | 34 | 57 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.83E-10 | 34 | 105 | No hit | No description |
SMART | SM00355 | 0.061 | 34 | 56 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.512 | 34 | 61 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 36 | 56 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 7.4E-4 | 81 | 105 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.2E-8 | 83 | 107 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.452 | 83 | 105 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.094 | 83 | 105 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 85 | 105 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MAMKRQRSNE GIDYANCLML LSCPQQKSYE NGEYECKTCN KKFSSFQALG GHRASHKRMK 60 LAEGEELKEQ AKSLSLWNKP KMHECSICGM GFSLGQALGG HMRKHRAVIN EGVSSINQII 120 EKFPVLKRLN SKRIMGLDLN LTPLENDDLM FGIKSPPTPI PLSLF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.7458 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:9132053}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g100100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC125368 | 0.0 | AC125368.7 Medicago truncatula clone mth2-13h15, complete sequence. | |||
GenBank | AC135797 | 0.0 | AC135797.13 Medicago truncatula clone mth2-11f7, complete sequence. | |||
GenBank | BT147317 | 0.0 | BT147317.1 Medicago truncatula clone JCVI-FLMt-2I11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003625524.1 | 1e-120 | zinc finger protein ZAT11 | ||||
Swissprot | Q9SLD4 | 1e-41 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | G7L0M7 | 1e-119 | G7L0M7_MEDTR; Cys2-His2 zinc finger transcription factor | ||||
STRING | AES81742 | 1e-120 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 5e-44 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g100100.1 |
Entrez Gene | 11433414 |
Publications ? help Back to Top | |||
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