PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g099540.2
Common NameMTR_7g099540
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 462aa    MW: 51365.6 Da    PI: 5.8427
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g099540.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.57.7e-16262308455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A++Y+ksLq
  Medtr7g099540.2 262 VHNLSERRRRDRINEKMKALQELIPRS-----NKSDKASMLDEAIDYLKSLQ 308
                      6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.2E-20255316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-20256324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.942258307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.42E-18261312No hitNo description
PfamPF000102.3E-13262308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-17264313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MNNYCVSYFQ SQMDQQRLPR PKKPIIADDE IMELLWQNGQ VVTQRPNHRH AKKPPSCQET  60
TRGGGASPVE NYNQYLFMQE NEMASWLHYD DSPFDRTFST DYLNTPPATA NNNSSIQTPT  120
SVVPSRPPIP PPRRMGHVQP ETPNFAKHGV MNTAVRESTV VDSCDTPAVM PAAFSETVKS  180
LADQTEGDTE VAVVSTTFDE PGGSSSSEEP EPVGKVAEQD RKRKGIEAEE WEYQSEDVDF  240
ESAEAKKNIS GSSTKRSRAA EVHNLSERRR RDRINEKMKA LQELIPRSNK SDKASMLDEA  300
IDYLKSLQLQ VQMMSMGCGM VPMMFPGIQQ YMPTVGMGMG MGMEMGINRP VMPFPNMLSG  360
SALPAAANLG PRFAMPPFHM PHVPTPGSSR MQAANQVDNN VITSAGTHDS NQSRTPNFSD  420
SYQQYLGPHQ MQFQLMQNQA MNQPNVSRPL EKPETRQSGD K*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266271ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.219510.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g099540.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1466810.0AC146681.23 Medicago truncatula clone mth2-77o10, complete sequence.
GenBankAC1617490.0AC161749.3 Medicago truncatula chromosome 7 clone mth2-182g1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013449960.10.0transcription factor PIF1 isoform X2
TrEMBLA0A072U4E00.0A0A072U4E0_MEDTR; Transcription factor
STRINGAES816930.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.31e-52phytochrome interacting factor 3-like 5
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]