PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g099540.1
Common NameMTR_7g099540
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 468aa    MW: 52121.5 Da    PI: 6.0272
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g099540.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.57.8e-16262308455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A++Y+ksLq
  Medtr7g099540.1 262 VHNLSERRRRDRINEKMKALQELIPRS-----NKSDKASMLDEAIDYLKSLQ 308
                      6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.7E-19255315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-19256316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.942258307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-17261312No hitNo description
PfamPF000102.3E-13262308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-17264313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MNNYCVSYFQ SQMDQQRLPR PKKPIIADDE IMELLWQNGQ VVTQRPNHRH AKKPPSCQET  60
TRGGGASPVE NYNQYLFMQE NEMASWLHYD DSPFDRTFST DYLNTPPATA NNNSSIQTPT  120
SVVPSRPPIP PPRRMGHVQP ETPNFAKHGV MNTAVRESTV VDSCDTPAVM PAAFSETVKS  180
LADQTEGDTE VAVVSTTFDE PGGSSSSEEP EPVGKVAEQD RKRKGIEAEE WEYQSEDVDF  240
ESAEAKKNIS GSSTKRSRAA EVHNLSERRR RDRINEKMKA LQELIPRSNK SDKASMLDEA  300
IDYLKSLQLQ VQRVQLMQMM SMGCGMVPMM FPGIQQYMPT VGMGMGMGME MGINRPVMPF  360
PNMLSGSALP AAANLGPRFA MPPFHMPHVP TPGSSRMQAA NQVDNNVITS AGTHDSNQSR  420
TPNFSDSYQQ YLGPHQMQFQ LMQNQAMNQP NVSRPLEKPE TRQSGDK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266271ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.219510.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g099540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1466810.0AC146681.23 Medicago truncatula clone mth2-77o10, complete sequence.
GenBankAC1617490.0AC161749.3 Medicago truncatula chromosome 7 clone mth2-182g1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003625475.10.0transcription factor PIF1 isoform X1
RefseqXP_024625778.10.0transcription factor PIF1 isoform X1
TrEMBLG7KZK80.0G7KZK8_MEDTR; Putative transcription factor bHLH family
STRINGAES816930.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46073351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.38e-44phytochrome interacting factor 3-like 5
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]