PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g097090.1 | ||||||||
Common Name | MTR_7g097090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | NAC | ||||||||
Protein Properties | Length: 292aa MW: 33546.7 Da PI: 5.3938 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 158.5 | 2.7e-49 | 10 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrF P+deelv++yL kk++++++ ++ e+d++ +ePw+Lp+ +k + +ewyfFs rd+kyatg r+nrat sgyWkatgkd+ vl+ Medtr7g097090.1 10 LPPGFRFYPSDEELVCHYLYKKITNEEVLK-GTLIEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATISGYWKATGKDRMVLD 102 79************************9655.6799*************88888999************************************** PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++e+vg++ktLvfy++rap+g kt W+mhe+rle Medtr7g097090.1 103 PiTQEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 138 999999***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.11E-59 | 8 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.812 | 10 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.0E-27 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MGLRDIGASL PPGFRFYPSD EELVCHYLYK KITNEEVLKG TLIEIDLHIC EPWQLPEVAK 60 LNANEWYFFS FRDRKYATGF RTNRATISGY WKATGKDRMV LDPITQEVVG MRKTLVFYRN 120 RAPNGIKTGW IMHEFRLETP HMPPKEDWVL CRVFHKSKEE NNNNNNSSKL NTQQFMYETT 180 PPSLTLMSSS PTNYQTIPSG YNKLDSFSSP MTTLHHLNPN QNNSSMMNLL QYSRETNPND 240 NSTVTQISSK GDDGYGFLWN MDLEENSLED GVASNLDAIR FEVDDDNVVL L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-46 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-46 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-46 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-46 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-46 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-46 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-46 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-46 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-46 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-46 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-46 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-46 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-46 | 9 | 156 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-46 | 9 | 156 | 16 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g097090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013449909.1 | 0.0 | NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A072U2K3 | 0.0 | A0A072U2K3_MEDTR; NAC transcription factor-like protein | ||||
STRING | XP_004493788.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4381 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 9e-93 | NAC domain containing protein 74 |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g097090.1 |
Entrez Gene | 25499273 |
Publications ? help Back to Top | |||
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