PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g096810.1
Common NameMTR_7g096810
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 129aa    MW: 14388.8 Da    PI: 6.258
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g096810.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.4e-191263256
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     +y+G+r+++ +g+++AeIrdp+      r++lg+f tae+Aa+a++aa+  ++g+
  Medtr7g096810.1 12 RYRGIRRRP-WGKFAAEIRDPTRK--GSRIWLGTFETAEQAARAYDAAAFHFRGH 63
                     6********.**********8542..4***********************99996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.35E-191172No hitNo description
SMARTSM003805.7E-381276IPR001471AP2/ERF domain
PfamPF008475.8E-131263IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-321271IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-231271IPR016177DNA-binding domain
PROSITE profilePS5103225.4351270IPR001471AP2/ERF domain
PRINTSPR003671.2E-111324IPR001471AP2/ERF domain
PRINTSPR003671.2E-113652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MEGEGNKNAE ARYRGIRRRP WGKFAAEIRD PTRKGSRIWL GTFETAEQAA RAYDAAAFHF  60
RGHKAILNFP NDFSHSSINY IPNTTSTSNS YQQQGDDTFD QLECLDNKLL EELLGQVQDD  120
GAGGSRFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-27377579Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g096810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013449888.13e-92ethylene-responsive transcription factor ERF098
SwissprotQ9LTC56e-36ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A072U3I96e-91A0A072U3I9_MEDTR; Ethylene response factor
STRINGXP_004493870.16e-51(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-29ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]