PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g096750.1
Common NameMTR_7g096750
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 139aa    MW: 15688.4 Da    PI: 5.83
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g096750.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39e-191969255
              AP2  2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr ++ +g+++AeIrd      ++ +r++lg+f taeeAa+a+++a+  ++g
  Medtr7g096750.1 19 KYRGVRIRP-WGKFAAEIRD----SaRHgARVWLGTFNTAEEAARAYDRAAFDMRG 69
                     8********.**********....33236***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.0E-361983IPR001471AP2/ERF domain
PfamPF008472.2E-141969IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-231978IPR016177DNA-binding domain
CDDcd000183.50E-281977No hitNo description
PROSITE profilePS5103223.2881977IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-311978IPR001471AP2/ERF domain
PRINTSPR003674.1E-112031IPR001471AP2/ERF domain
PRINTSPR003674.1E-114359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MENERKKKVS ECELPKQIKY RGVRIRPWGK FAAEIRDSAR HGARVWLGTF NTAEEAARAY  60
DRAAFDMRGS SAILNFPQEH FPSNVASNPS SSSNSTSSSS STVKSELGEQ IIEFEYLDEK  120
LLEELLDPEN TINNNWFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-341912114114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g096750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013449884.11e-98ethylene-responsive transcription factor ERF098
SwissprotQ9LTC52e-40ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A072U2H22e-97A0A072U2H2_MEDTR; AP2 domain class transcription factor
STRINGXP_004493770.13e-53(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.13e-26ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]