PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g096700.1
Common NameMTR_7g096700
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 144aa    MW: 16366.4 Da    PI: 5.7594
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g096700.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-171969255
              AP2  2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr ++ +g+ +AeIrd      ++ +r++lg+f taeeAa+a+++a+ +++g
  Medtr7g096700.1 19 KYRGVRIRP-WGKCAAEIRD----SaRHgARVWLGTFNTAEEAARAYDRAAFEMRG 69
                     8********.**********....33236*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.22E-231979IPR016177DNA-binding domain
PfamPF008475.7E-131969IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-301978IPR001471AP2/ERF domain
SMARTSM003809.7E-351983IPR001471AP2/ERF domain
CDDcd000188.37E-301978No hitNo description
PROSITE profilePS5103222.5371977IPR001471AP2/ERF domain
PRINTSPR003672.1E-102031IPR001471AP2/ERF domain
PRINTSPR003672.1E-104359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MEDELKEKVK QDELPKKIKY RGVRIRPWGK CAAEIRDSAR HGARVWLGTF NTAEEAARAY  60
DRAAFEMRGS SAILNFPHEH YFPCSVVYNP SKPSSSSNST SSSSSSKVKS ELVEQVIEFE  120
YLDEKLLEEL LDFESIINQD LFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-341912614114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g096700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013449879.11e-102ethylene-responsive transcription factor ERF096
SwissprotQ9LTC51e-38ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A072U2G91e-101A0A072U2G9_MEDTR; AP2 domain class transcription factor
STRINGXP_004493770.11e-51(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.11e-26ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]