PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g096530.1 | ||||||||
Common Name | MTR_7g096530 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LBD | ||||||||
Protein Properties | Length: 219aa MW: 24173.3 Da PI: 7.4255 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.7 | 1.3e-40 | 14 | 115 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p +er +a+ +++yeA+ar+rdPvyG+v++i++lqqq+++l+a+ Medtr7g096530.1 14 PCGACKFLRRKCAPDCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHIPAHERCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQ 107 7*************************99****************************************************************** PP DUF260 94 lallkeel 101 l ++k++l Medtr7g096530.1 108 LMQVKSQL 115 **999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.367 | 13 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.4E-39 | 14 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Gene3D | G3DSA:3.90.249.10 | 7.6E-4 | 117 | 205 | IPR016110 | Adenovirus Pll, hexon, subdomain 3 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0019028 | Cellular Component | viral capsid | ||||
GO:0005198 | Molecular Function | structural molecule activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MASSNGTSSG TGSPCGACKF LRRKCAPDCI FAPYFCSEQG PARFAAIHKV FGASNVSKLL 60 LHIPAHERCE AVVTIAYEAQ ARIRDPVYGC VSHIFALQQQ VACLQAQLMQ VKSQLSHNIE 120 NNNQWIGNNN NVAATQAMNY PFCPTYMNPI SPQSSLESSI DHSSSMNDGM MSMQDVQSSR 180 EDFSFQGCNN YKKRMPHNNN NDHDLGELQE IAIRMMRN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-40 | 7 | 115 | 4 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-40 | 7 | 115 | 4 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During lateral root formation, expressed in the lateral root primordia, and the developing, emerged, and mature lateral roots. {ECO:0000269|PubMed:19717544}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and faintly in shoots. {ECO:0000269|PubMed:12068116}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00309 | DAP | Transfer from AT2G42430 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g096530.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT142364 | 0.0 | BT142364.1 Medicago truncatula clone JCVI-FLMt-14N17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013449860.1 | 1e-164 | LOB domain-containing protein 16 | ||||
Swissprot | Q9SLB7 | 5e-77 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | A0A072U455 | 1e-163 | A0A072U455_MEDTR; LOB domain protein | ||||
STRING | XP_004493763.1 | 1e-115 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4509 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 9e-53 | lateral organ boundaries-domain 16 |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g096530.1 |
Entrez Gene | 25499227 |