PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g096350.2 | ||||||||
Common Name | MTR_7g096350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 504aa MW: 55391.4 Da PI: 7.3405 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37 | 6e-12 | 355 | 401 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ +I +Lq Medtr7g096350.2 355 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITHITDLQ 401 799***********************66......*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.3E-35 | 51 | 226 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.456 | 351 | 400 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.24E-18 | 354 | 422 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.71E-14 | 354 | 405 | No hit | No description |
Pfam | PF00010 | 1.8E-9 | 355 | 401 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.8E-17 | 355 | 420 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-14 | 357 | 406 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00468 | 451 | 500 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 504 aa Download sequence Send to blast |
MAGEWFCKNE EDKAMLESVL GNEAFAFFSS AVSKHVFSDV IVPPNLDVTI HQRLCHIVKG 60 SKWNYAILWQ VAGLKSGGYV LKYGEGHCQD PKGGPRNEQE REKDDVRRKV LGRIHGCWGG 120 SSSVENIYKK LDSVSDLYML YLTSVYYVFG FNSQYGPGNS FKCAKPSWSS DAGSCLNQYE 180 SRSFLAKSAG FQSVAFVPLK AGVIELGSTE MVPEEQGFLD MVKATFGESI SGQAKVAPKI 240 FGHELSLGDT KSQSITISFS PKVEDDSGFT SDSYEVQALG ANHAYGNSSN GGVGDSNEAK 300 KYPQLGQMIP GNFTSQARVS SIDLGNEDSS SPLGEERKPR KRGRKPANGR EEPLNHVEAE 360 RQRREKLNQR FYALRAVVPN ISKMDKASLL GDAITHITDL QKKIKLMETE KNMADNKGQQ 420 LPLQDIDFQA RQDDAVVRVS CPMDIHPVSG IVKVFREHQI VAQEANVSTS QDKVIHTFSI 480 RTQGGEASAI QLKEKLEASL AKN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-28 | 349 | 424 | 2 | 77 | Transcription factor MYC2 |
5gnj_B | 2e-28 | 349 | 424 | 2 | 77 | Transcription factor MYC2 |
5gnj_E | 2e-28 | 349 | 424 | 2 | 77 | Transcription factor MYC2 |
5gnj_F | 2e-28 | 349 | 424 | 2 | 77 | Transcription factor MYC2 |
5gnj_G | 2e-28 | 349 | 424 | 2 | 77 | Transcription factor MYC2 |
5gnj_I | 2e-28 | 349 | 424 | 2 | 77 | Transcription factor MYC2 |
5gnj_M | 2e-28 | 349 | 424 | 2 | 77 | Transcription factor MYC2 |
5gnj_N | 2e-28 | 349 | 424 | 2 | 77 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 336 | 344 | RKPRKRGRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.8414 | 0.0 | glandular trichome| leaf| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00099 | PBM | Transfer from AT4G16430 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g096350.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT133685 | 0.0 | BT133685.1 Medicago truncatula clone JCVI-FLMt-16B12 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013449847.1 | 0.0 | transcription factor bHLH3 | ||||
Swissprot | A0A3Q7H216 | 1e-165 | MTB3_SOLLC; Transcription factor MTB3 | ||||
TrEMBL | A0A072UDK3 | 0.0 | A0A072UDK3_MEDTR; ABA-inducible bHLH-type transcription factor | ||||
STRING | XP_004493757.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16430.1 | 1e-148 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g096350.2 |
Entrez Gene | 25499214 |
Publications ? help Back to Top | |||
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