PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g093130.2 | ||||||||
Common Name | MTR_7g093130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | C3H | ||||||||
Protein Properties | Length: 232aa MW: 24580.9 Da PI: 9.7592 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.2 | 1.4e-08 | 33 | 58 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k ++C+ f Ck+Gd+C+FaHg+ Medtr7g093130.2 33 KSRICSKFNTAEGCKFGDKCHFAHGE 58 6799********************96 PP | |||||||
2 | zf-CCCH | 37.9 | 2.9e-12 | 202 | 225 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt+lC +fa+ G C +GdrC+FaHg Medtr7g093130.2 202 KTKLCENFAK-GSCTFGDRCHFAHG 225 9*********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-13 | 29 | 63 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.01E-7 | 30 | 62 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.131 | 31 | 59 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.0E-6 | 33 | 58 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.007 | 33 | 58 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 8.33E-15 | 94 | 176 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 2.0E-10 | 104 | 173 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 9.7E-15 | 104 | 172 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 14.613 | 105 | 168 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 5.9E-12 | 107 | 169 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 9.19E-13 | 107 | 169 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 5.6E-15 | 196 | 230 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.183 | 200 | 227 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.16E-8 | 200 | 230 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-7 | 200 | 226 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.8E-10 | 202 | 225 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MMNLTPAAPP APRNVPAPRN AHAPNGSAPS AVKSRICSKF NTAEGCKFGD KCHFAHGEWE 60 LGKPVAPSFD DHRHNDHRHM GPPNAGRFGG HRMEPPPVPA SFGANATAKI SVEASLAGAI 120 IGKGGVNSKQ ICRQTGAKLA IREHEDPNLK NIELVGTFEQ IKDASNMVKD LLLTLQMSAP 180 PKSNQGPPGH HGAPGHHGNN LKTKLCENFA KGSCTFGDRC HFAHGAVELR K* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.9024 | 0.0 | glandular trichome| leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g093130.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC186676 | 0.0 | AC186676.3 Medicago truncatula chromosome 7 BAC clone mte1-31d11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003625254.1 | 1e-169 | zinc finger CCCH domain-containing protein 14 | ||||
Swissprot | Q69XQ3 | 9e-74 | C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44 | ||||
TrEMBL | A0A072U3E2 | 1e-169 | A0A072U3E2_MEDTR; Zinc finger C-x8-C-x5-C-x3-H type family protein | ||||
STRING | AES81472 | 1e-168 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 1e-58 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g093130.2 |
Entrez Gene | 11430803 |
Publications ? help Back to Top | |||
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