PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g093130.1
Common NameMTR_7g093130
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 302aa    MW: 32266.5 Da    PI: 9.9621
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g093130.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.5e-073660226
                     -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                     k ++C  f+ t  C++G++C+F H 
  Medtr7g093130.1 36 KSKPCTKFFSTSGCPFGESCHFLHH 60
                     7789********************6 PP
2zf-CCCH25.72e-08103128227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      k ++C+ f     Ck+Gd+C+FaHg+
  Medtr7g093130.1 103 KSRICSKFNTAEGCKFGDKCHFAHGE 128
                      6799********************96 PP
3zf-CCCH37.54.1e-12272295226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      kt+lC +fa+ G C +GdrC+FaHg
  Medtr7g093130.1 272 KTKLCENFAK-GSCTFGDRCHFAHG 295
                      9*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0333461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0093462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-63561IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-83660IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-53660IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-1399133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-7100132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.131101129IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-5103128IPR000571Zinc finger, CCCH-type
SMARTSM003560.007103128IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.43E-14164246IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.6E-14174242IPR004088K Homology domain, type 1
SMARTSM003222.0E-10174243IPR004087K Homology domain
PROSITE profilePS5008414.613175238IPR004088K Homology domain, type 1
PfamPF000139.4E-12177239IPR004088K Homology domain, type 1
CDDcd001052.81E-12177239No hitNo description
Gene3DG3DSA:4.10.1000.108.3E-15266300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.183270297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-7270300IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-7270296IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9272295IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDMRKRGRPE HGFNNNGGFK KSRHEMESLS TGVGSKSKPC TKFFSTSGCP FGESCHFLHH  60
VPGGYNAVSQ MMNLTPAAPP APRNVPAPRN AHAPNGSAPS AVKSRICSKF NTAEGCKFGD  120
KCHFAHGEWE LGKPVAPSFD DHRHNDHRHM GPPNAGRFGG HRMEPPPVPA SFGANATAKI  180
SVEASLAGAI IGKGGVNSKQ ICRQTGAKLA IREHEDPNLK NIELVGTFEQ IKDASNMVKD  240
LLLTLQMSAP PKSNQGPPGH HGAPGHHGNN LKTKLCENFA KGSCTFGDRC HFAHGAVELR  300
K*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.90240.0glandular trichome| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g093130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1866760.0AC186676.3 Medicago truncatula chromosome 7 BAC clone mte1-31d11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003625254.10.0zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-107C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLG7KVD00.0G7KVD0_MEDTR; Putative transcription factor C3H family
STRINGAES814720.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.14e-57C3H family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]