PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g093030.2 | ||||||||
Common Name | MTR_7g093030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | G2-like | ||||||||
Protein Properties | Length: 295aa MW: 32815.6 Da PI: 7.1249 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102 | 3.8e-32 | 212 | 266 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHe+Fve+v++LGG+ekAtPk+il++m+ +gLt+ hvkSHLQkYR+ Medtr7g093030.2 212 KTRIRWTKDLHEKFVECVNRLGGAEKATPKAILKMMDSEGLTIFHVKSHLQKYRT 266 68****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.63E-17 | 210 | 266 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.8E-28 | 210 | 267 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.5E-23 | 212 | 267 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.3E-9 | 216 | 265 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MSQIWNIGAC NQQQLSIVEE GESTKSCNTN TIMSRFESPA SAFYATENCM GFAEFDHQVD 60 NNQSLSSQSY KVNDLEFPLC QSLRENNHLL DASNQHDPNF ELSNTLQALV KSQLNGNQHL 120 RFPENLNKFS CGNFPFEQQK LFFDGLASVS NSSSFCNKGN HDYMVARGSY HLSVEQLNFS 180 SQHEKLSPTI SAGSLSTSLG STSSSGNVVS SKTRIRWTKD LHEKFVECVN RLGGAEKATP 240 KAILKMMDSE GLTIFHVKSH LQKYRTAKFM PESAQGKSDK RIHIDDVQHV GVKT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-25 | 212 | 269 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-25 | 212 | 269 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-25 | 212 | 269 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-25 | 212 | 269 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-25 | 212 | 269 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-25 | 212 | 269 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-25 | 212 | 269 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-25 | 212 | 269 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.9377 | 0.0 | flower| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g093030.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003625245.1 | 0.0 | myb family transcription factor PHL5 | ||||
Swissprot | Q0WVU3 | 6e-39 | PHL5_ARATH; Myb family transcription factor PHL5 | ||||
TrEMBL | A0A072U1V2 | 0.0 | A0A072U1V2_MEDTR; Myb-like transcription factor family protein | ||||
TrEMBL | G7KVC1 | 0.0 | G7KVC1_MEDTR; Myb-like transcription factor family protein | ||||
STRING | AES81463 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.2 | 2e-39 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g093030.2 |
Entrez Gene | 11444748 |
Publications ? help Back to Top | |||
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