PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g092190.1
Common NameMTR_7g092190
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 289aa    MW: 32525.3 Da    PI: 6.1861
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g092190.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59e-202978255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+++l+g
  Medtr7g092190.1 29 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATAEEAAMAYDEAARRLYG 78
                     69****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.30E-322887No hitNo description
PfamPF008472.6E-132978IPR001471AP2/ERF domain
PROSITE profilePS5103222.7482986IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-302987IPR001471AP2/ERF domain
SMARTSM003803.6E-372992IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-212987IPR016177DNA-binding domain
PRINTSPR003672.3E-103041IPR001471AP2/ERF domain
PRINTSPR003672.3E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDNSKKSPLK PWKKGPTRGK GGPQNASCEY RGVRQRTWGK WVAEIREPKK RTRLWLGSFA  60
TAEEAAMAYD EAARRLYGPD AYLNLPHMQT HSNSTMKTGK FKWLPSKNFI SMFPSCGLLN  120
VNAQPSVHLI HQRLQEFKQN AVVASQSSFS SSSNDPKAEE IQKVDSKKSH TEDPLPKETI  180
VQTSANKMLG DLQEEKPQID LNEFLQQMGI LKEGSHSEQT ESSGSSTVHE VLPRDDNDQL  240
GIFSDMSVNW EALIEMHEFA GIEESEATHL EAYDPNDHLN FSTSIWDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-183086360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g092190.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1433410.0AC143341.8 Medicago truncatula clone mth2-7a11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003625169.20.0dehydration-responsive element-binding protein 2F
SwissprotQ9SVX52e-87DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A396H5620.0A0A396H562_MEDTR; Putative transcription factor AP2-EREBP family
TrEMBLG7KTK90.0G7KTK9_MEDTR; Dehydration-responsive element-binding protein
STRINGAES813870.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54773150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.12e-72ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]