PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g089800.1 | ||||||||
Common Name | MTR_7g089800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bZIP | ||||||||
Protein Properties | Length: 453aa MW: 49981 Da PI: 7.2402 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30.1 | 1.1e-09 | 165 | 207 | 3 | 45 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 + k rr+++NReAAr+sR+RKka++++Le +L++ ++L Medtr7g089800.1 165 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 207 568899************************9777777666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 6.6E-8 | 157 | 210 | No hit | No description |
SMART | SM00338 | 1.4E-8 | 163 | 226 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 6.4E-7 | 163 | 209 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.415 | 165 | 209 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.88E-7 | 167 | 210 | No hit | No description |
CDD | cd14708 | 6.58E-22 | 167 | 219 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 170 | 185 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 1.4E-30 | 250 | 324 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MGSRGRTAED TNKVVNGMPS YAPPSNSMGM EGTNIHPSRI SDFGALEQSL GFRVEDAMNL 60 SRNPVFNQMK ANSQALGADI QFGALSKSIA NSDINLSAAI AGSQTLQLQK DAMPNLASTS 120 GGHRENWGES NMAEGSADTS TDDTEDKNQM PERGESSERS KDKSDQKTLR RLAQNREAAR 180 KSRLRKKAYV QQLESSRLKL TQLEQELQRA RQQGIFISST GEQTHSMSGN GAMAFDAEYA 240 RWLEEHNRQT NELRAAINSH AGDIELRTIV DNFMTQFEDI YRLKGVAAKA DVFHILSGMW 300 KTPAERCFMW IGGFRSSELL KLLVSHLEPL TEQQLMGIYN LQQSSQQAED ALSQGMDALQ 360 QSLSETLANG SPNPSGASGN VANYMGQMAM AMGKLGTLEG FLRQADNLRQ QTLQQMLRIL 420 TTRQSARALL AISDYFSRLR ALSSLWLARP RE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.1871 | 0.0 | leaf| pod| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g089800.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT139514 | 0.0 | BT139514.1 Medicago truncatula clone JCVI-FLMt-18J5 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003624993.1 | 0.0 | transcription factor TGA2.3 isoform X1 | ||||
Refseq | XP_024626252.1 | 0.0 | transcription factor TGA2.3 isoform X1 | ||||
Refseq | XP_024626253.1 | 0.0 | transcription factor TGA2.3 isoform X1 | ||||
Swissprot | O24160 | 0.0 | TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1 | ||||
TrEMBL | G7KQS1 | 0.0 | G7KQS1_MEDTR; Leucine zipper transcription factor | ||||
STRING | AES81211 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1470 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12250.2 | 1e-147 | TGACG motif-binding factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g089800.1 |
Entrez Gene | 11417630 |
Publications ? help Back to Top | |||
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