PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g086960.1
Common NameMTR_7g086960, MtrDRAFT_AC157472g16v2
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 357aa    MW: 39821.3 Da    PI: 8.9705
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g086960.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.5e-1689134147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  Medtr7g086960.1  89 RGHWRPIEDAKLKELVAEYGPQNWNLIAEHLE-GRSGKSCRLRWFNQ 134
                      899*****************************.***********996 PP
2Myb_DNA-binding55.71.1e-17141184146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++ +++eE+e+l+ a+k++G++ W+ Iar ++ gRt++ +k++w+ 
  Medtr7g086960.1 141 KKTFSEEEEERLLSAHKMYGNK-WAIIARLFP-GRTDNAVKNHWHV 184
                      5789******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.15284135IPR017930Myb domain
SMARTSM007175.4E-1588137IPR001005SANT/Myb domain
SuperFamilySSF466894.12E-2889182IPR009057Homeodomain-like
PfamPF002496.3E-1689134IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-2690142IPR009057Homeodomain-like
CDDcd001671.18E-1392133No hitNo description
PROSITE profilePS5129425.632136190IPR017930Myb domain
SMARTSM007171.4E-15140188IPR001005SANT/Myb domain
PfamPF002493.9E-15141183IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-20143188IPR009057Homeodomain-like
CDDcd001673.30E-7152183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0071367Biological Processcellular response to brassinosteroid stimulus
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MTSQKFNNGD MSLFPLAPIP STHPFDSKAL PLTNLEKGLQ ILRPSMFKSK VEDGCFEVQG  60
KNLSLKLGNE VEDKSSVSVK VGYSKLCSRG HWRPIEDAKL KELVAEYGPQ NWNLIAEHLE  120
GRSGKSCRLR WFNQLDPRIN KKTFSEEEEE RLLSAHKMYG NKWAIIARLF PGRTDNAVKN  180
HWHVIMARRH REQCTVYRRR KPVVVESLSK DLKLSLSNNA ASDSTISSTI DGNVSTCTNL  240
LLTPSSAKLV VPVENHQGYG SLMDKSRESV VATRDVNFDK YFGACKKNEQ VEKLKLIDVV  300
VDQSNFSDSN SEVSVSESVT TNRSNISISG ESENVGVKIN MLLPFIDFLG VGAIQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-34891897107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00516DAPTransfer from AT5G17800Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g086960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1574720.0AC157472.3 Medicago truncatula chromosome 7 clone mth2-41h16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003624741.10.0transcription factor MYB52
TrEMBLA2Q4D10.0A2Q4D1_MEDTR; Homeodomain-related
STRINGAES809590.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-69myb domain protein 105
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]