PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g086780.1 | ||||||||
Common Name | MTR_7g086780, MtrDRAFT_AC157472g17v2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | Dof | ||||||||
Protein Properties | Length: 423aa MW: 46386.7 Da PI: 6.9845 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.6 | 6.5e-39 | 95 | 154 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+++cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ Medtr7g086780.1 95 PDKIVQCPRCNSWDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHL 154 7899******************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 9.0E-29 | 83 | 152 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.8E-31 | 97 | 153 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.071 | 99 | 153 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 101 | 137 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MSETQKDHGI MLFGWKIPVP ECRIPPNSGP MDTCSSTRKT EAEIPCAEKT EQQDNSSDSM 60 DSKQESIQEK EPIVNSKPTE DNTETTDQDK LLKKPDKIVQ CPRCNSWDTK FCYFNNYNVN 120 QPRHFCKNCQ RYWTAGGTMR NVPIGAGRRK NKHLASQYRQ IIVTTNGIPT TRLESTNSSD 180 HHHTSTDNET VLKFGPDTPL CESMESMLHL RDQKRNADAN SNSSVQHRED PSLCGSSVTN 240 TGNQGNEVSE HNASNWLQCY PVSPWVLPMN PGWNNVASMA AVHPTSASMQ WCPTPMLAIP 300 GIRPQNIPLQ LVAASHWSGP SLCLSPPSST SNSCCSGNGS PTLGKHSRDT VFVDEDKTDK 360 CVPVRKTIRT DVTDAVSKSP IRATLATKKP NEEGKDGVLG GSQILEASSG AISHAHTIQE 420 SI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g086780.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC137986 | 0.0 | AC137986.27 Medicago truncatula clone mth2-7g6, complete sequence. | |||
GenBank | AC157472 | 0.0 | AC157472.3 Medicago truncatula chromosome 7 clone mth2-41h16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003624725.3 | 0.0 | cyclic dof factor 1 | ||||
TrEMBL | A0A396H9C4 | 0.0 | A0A396H9C4_MEDTR; Putative transcription factor C2C2-Dof family | ||||
STRING | AES80943 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3502 | 31 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 5e-47 | cycling DOF factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g086780.1 |
Entrez Gene | 11435622 |
Publications ? help Back to Top | |||
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