PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g084370.1
Common NameMTR_7g084370
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 283aa    MW: 31153.8 Da    PI: 4.5684
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g084370.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-184190255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a++ ++g
  Medtr7g084370.1 41 RYLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARGMRG 90
                     588******.**********965...5**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.6E-3441104IPR001471AP2/ERF domain
CDDcd000186.93E-314197No hitNo description
SuperFamilySSF541718.5E-214198IPR016177DNA-binding domain
PROSITE profilePS5103220.9564198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.9E-294197IPR001471AP2/ERF domain
PfamPF008472.5E-114290IPR001471AP2/ERF domain
PRINTSPR003671.1E-84253IPR001471AP2/ERF domain
PRINTSPR003671.1E-86480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MSPLKGKKKQ TISTSSETTT TTTTTTQEQQ QQQQQTAWGG RYLGVRRRPW GRYAAEIRDP  60
STKERHWLGT FDTAEEAALA YDRAARGMRG SRARTNFVYH DTPPGSSVTP ILSPDQQQQQ  120
QQPQSFYDLS FVLQPEPVPI QQNPGLSIDP VSIITSSGSY GYGEGNDNNY FNKYSLPHQV  180
PLDTLEAGIN NINNNGNSYF NNDNVELPPL PPDITSSACY SPGDSVFNGG DHGYFYSSWE  240
QNASEDCYNN QMLGTNMGGA ENNIMAGSVN GTFDFGSSSF FF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-214297359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-213797162ATERF1
3gcc_A4e-213797162ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g084370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013449469.10.0ethylene-responsive transcription factor LEP
TrEMBLA0A072U1G50.0A0A072U1G5_MEDTR; AP2 domain class transcription factor
STRINGXP_004493337.16e-92(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.11e-25ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]