PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g083540.1
Common NameMTR_7g083540
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family CO-like
Protein Properties Length: 391aa    MW: 44311.3 Da    PI: 6.7352
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g083540.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.34.7e-06434535
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHk 35
                      C+ ++   + l+C+ ++  lC  C ++ H+
  Medtr7g083540.1  4 PCDYCDTRSAVLYCKPDSAKLCLVCDQHVHS 34
                     6**************************9995 PP
2CCT66.57.5e-23341384144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      R  a+lRYkeK+ktR+F+K+irYesRKa+A++R+Rv+GrFvk++
  Medtr7g083540.1 341 RGDAMLRYKEKKKTRRFDKHIRYESRKARADTRKRVRGRFVKAT 384
                      6789**************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.371147IPR000315B-box-type zinc finger
CDDcd000211.33E-6347No hitNo description
SMARTSM003362.6E-7447IPR000315B-box-type zinc finger
PROSITE profilePS5101715.12341383IPR010402CCT domain
PfamPF062031.3E-16341383IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MSFPCDYCDT RSAVLYCKPD SAKLCLVCDQ HVHSANALAL KHVRFQICQN CKNDAASVRC  60
FTENLVQCHR CDWNSHGGDD DDSTSSSFHH HNRRRIEGLT GCPSVHEIVS TLGLDLKPND  120
AVFVAEFEGP VVPVVKNRDE VYEQVVEVAK RKRNLEEDQN ELRFNDCCND VDDLLLLQQT  180
PFTSLLNFSS EFDVGVKRNS NDYGNESGLL LWDRNPSYQP PQVWDFQLQK SRDMTYDGVE  240
NASLSIPKSL QDVHNMNCST LGDDILSRNN QSDQSSSSHV KKKVESNKKT RDGLSSESKL  300
IESITYSGAD SVPVMEHLLS GSENVSNINA KISLEEHTRN RGDAMLRYKE KKKTRRFDKH  360
IRYESRKARA DTRKRVRGRF VKATDDIQEG *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.232480.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g083540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU0653390.0GU065339.1 Medicago truncatula cultivar Jemalong6 CONSTANS-like protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003624458.10.0zinc finger protein CONSTANS-LIKE 15
TrEMBLG7KW760.0G7KW76_MEDTR; Putative transcription factor C2C2-CO-like family
STRINGAES806760.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47372843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.23e-57B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]