PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g082780.1 | ||||||||
Common Name | MTR_7g082780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | NF-YC | ||||||||
Protein Properties | Length: 226aa MW: 25556.9 Da PI: 4.6582 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 36.3 | 1.2e-11 | 49 | 108 | 36 | 96 |
NF-YC 36 vkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 +m+s + l++kace+f+ +lt + l+a+e++ r +k +d+ +a+++td dfl ++ Medtr7g082780.1 49 EEMVSVDQ-LLMTKACEVFLKDLTNLALLNAKEKNERIVKPCDVVKAIKETDRMDFLKNVA 108 35778775.799*********************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 9.5E-10 | 57 | 107 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.19E-10 | 57 | 110 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MDPAQAHFLF SLLFSLPNVW GVQGCMGIKV DFNINPVPSE LPLEAMKNEE MVSVDQLLMT 60 KACEVFLKDL TNLALLNAKE KNERIVKPCD VVKAIKETDR MDFLKNVASD VKRWDGTGIP 120 DPIWYTSQEG MELDYRNVEN FLYGNQTCFP HDADCMENPI MNMGNSNARW CEIFSHKSHE 180 SLDSYYTAKH DNTIKRAGGN QPRASPTLDD ATTKGTYGWS YWEGE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g082780.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC144375 | 1e-100 | AC144375.14 Medicago truncatula clone mth2-11p13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | G7KV87 | 1e-170 | G7KV87_MEDTR; Uncharacterized protein | ||||
STRING | AES80618 | 1e-170 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF39074 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 3e-08 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g082780.1 |
Entrez Gene | 11427033 |
Publications ? help Back to Top | |||
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