PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g081795.1
Common NameMTR_7g081795
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 207aa    MW: 23553.5 Da    PI: 8.7814
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g081795.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.4e-1859109255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrdp++ng  +r++lg++ t+eeA  a+++a+ k++g
  Medtr7g081795.1  59 RYRGVRRRP-WGKFAAEIRDPKKNG--ARVWLGTYVTEEEAGFAYDKAAFKMRG 109
                      8********.***********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.79E-2958119No hitNo description
SMARTSM003801.1E-3459123IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-2259118IPR016177DNA-binding domain
PfamPF008474.9E-1259109IPR001471AP2/ERF domain
PROSITE profilePS5103223.53859117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3059118IPR001471AP2/ERF domain
PRINTSPR003671.6E-136071IPR001471AP2/ERF domain
PRINTSPR003671.6E-1399119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MLFSTTKDSE FAYLEDIQQY LLHDDSNIHT PHQQIQSPNN DSKTTASKRE VKAPPTWKRY  60
RGVRRRPWGK FAAEIRDPKK NGARVWLGTY VTEEEAGFAY DKAAFKMRGQ KAKLNFPHLI  120
GSDVYMSESK RKVALKRESP EPSSSSEDSC ESSSPGSKRR SMVDLLNKLA KNRSQVMVVE  180
NEMASLENDV EQWVNELSDC SLIWCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2858122468ATERF1
3gcc_A3e-2858122468ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.24491e-104root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitously expressed after ethylene treatment. {ECO:0000269|PubMed:11950980}.
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g081795.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1431721e-123BT143172.1 Medicago truncatula clone JCVI-FLMt-5M13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013449424.11e-154ethylene-responsive transcription factor 1
SwissprotQ8L9K16e-39ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A072U1A21e-153A0A072U1A2_MEDTR; AP2-domain DNA-binding protein
STRINGXP_004493050.11e-104(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.16e-38ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]