PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g081190.1
Common NameMTR_7g081190, MtrDRAFT_AC149129g20v2
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Trihelix
Protein Properties Length: 389aa    MW: 43393.8 Da    PI: 10.2141
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g081190.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.33e-2145138186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkr...tsessstcpyfdqle 86 
                      +Wt +e+ aLi+ +r+++ +l+r++lk+++W+ev++++      + ++ ++++qC++k+e+l+kry+ + +  ++    +s+sss++++f+ ++
  Medtr7g081190.1  45 CWTPEETSALIDSYRDKWYSLGRTNLKATHWQEVADAVavrcpNSSPVAKTAVQCRHKMEKLRKRYRSEIQKLRSLpvpRSRSSSSWVLFKAMD 138
                      8***********************************************************************9998655589999*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-1844140No hitNo description
SMARTSM005951.1E-953145IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MATSSPPPSS PTESIPSPPS AVPLPLSLPA PPPPPTSSRR LPPPCWTPEE TSALIDSYRD  60
KWYSLGRTNL KATHWQEVAD AVAVRCPNSS PVAKTAVQCR HKMEKLRKRY RSEIQKLRSL  120
PVPRSRSSSS WVLFKAMDSM EKGPSPPSPP HKPENPNHNA NHNHIHSHNL INHRETLEND  180
DYDDDDLYEE LRSAAGGGSG SGNTRSLDKL YRNGVSGGFG GSGSGFRIRI PTGVSVAQPG  240
SKFYPKMNNN SESGSRINGG TRLVKERVVL GKRERERDVE RERERDPIGE MVNAIKVLRD  300
GFVRMEQMKM EMAREIETMR MEMEMKRTEM ILESQQRIVE AFAKAISEKN KKRKLRKGNT  360
INNNDNNIIN NNGNNNNNNN NIASPSES*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.180910.0glandular trichome| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g081190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1491290.0AC149129.3 Medicago truncatula chromosome 7 clone mth2-139m18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024626779.10.0trihelix transcription factor ASIL2
TrEMBLA2Q1W10.0A2Q1W1_MEDTR; MADF; Homeodomain-like
STRINGAES804940.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46382838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.16e-30Trihelix family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]