PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g080460.1
Common NameMTR_7g080460
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family AP2
Protein Properties Length: 690aa    MW: 76555.5 Da    PI: 6.7086
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g080460.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.68.4e-15261320155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Medtr7g080460.1 261 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 320
                      57*******************666664478446*************************98 PP
2AP246.31.1e-14363414155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Medtr7g080460.1 363 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 414
                      57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.6E-17261330IPR016177DNA-binding domain
PfamPF008471.3E-11261320IPR001471AP2/ERF domain
CDDcd000189.34E-23261330No hitNo description
Gene3DG3DSA:3.30.730.101.9E-15262329IPR001471AP2/ERF domain
PROSITE profilePS5103219.164262328IPR001471AP2/ERF domain
SMARTSM003804.8E-29262334IPR001471AP2/ERF domain
PRINTSPR003672.8E-6263274IPR001471AP2/ERF domain
CDDcd000182.94E-25363424No hitNo description
PfamPF008473.6E-10363414IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18363424IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-18364423IPR001471AP2/ERF domain
PROSITE profilePS5103219.058364422IPR001471AP2/ERF domain
SMARTSM003807.0E-34364428IPR001471AP2/ERF domain
PRINTSPR003672.8E-6404424IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MASMNLLGFS LSPQEQHPST QDQTVASRFG FNPNEISGSD VQGDHCYDLS SHTTPHHSLN  60
LSHPFSIYEA FHTNNNIHTT QDWKENYNNQ NLLLGTSCMN QNVNNNNQQA QPKLENFLGG  120
HSFTDHQEYG GSNSYSSLHL PPHQPEASCG GGDGSTSNNN SIGLSMIKTW LRNQPPPPEN  180
NNNNNNESGA RVQTLSLSMS TGSQSSSSVP LLNANVMSGE ISSSENKQPP TTAVVLDSNQ  240
TSVVESAVPR KSVDTFGQRT SIYRGVTRHR WTGRYEAHLW DNSCRREGQT RKGRQVYLGG  300
YDKEEKAARA YDLAALKYWG TTTTTNFPIS HYEKEVEEMK HMTRQEYVAS LRRKSSGFSR  360
GASIYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDVAAI KFRGLSAVTN  420
FDMSRYDVKT ILESSTLPIG GAAKRLKDME QVELNHVNVD ISHRTEQDHS IINNTSHLTE  480
QAIYAATNAS NWHALSFQHQ QPHHHYNANN MQLQNYPYGT QTQKLWCKQE QDSDDHSTYT  540
TATDIHQLQL GNNNNNTHNF FGLQNIMSMD SASMDNSSGS NSVVYGGGDH GGYGGNGGYM  600
IPMAIANDGN QNPRSNNNFG ESEIKGFGYE NVFGTTTDPY HAQAARNLYY QPQQLSVDQG  660
SNWVPTAIPT LAPRTTNVSL CPPFTLLHE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.107980.0root| seed
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g080460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8999090.0AY899909.1 Medicago truncatula AP2/EREBP transcription factor BABY BOOM (BBM) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003624212.10.0AP2-like ethylene-responsive transcription factor BBM1
TrEMBLG7KSE10.0G7KSE1_MEDTR; AP2-like ethylene-responsive transcription factor
STRINGAES804300.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81862840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-143AP2 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]