PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g079840.4
Common NameMTR_7g079840
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 409aa    MW: 44857.5 Da    PI: 8.2279
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g079840.4genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.4e-112147127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                     ++++ C+++ rtG C++G++C+F+H+p
  Medtr7g079840.4 21 PGEPDCSYYIRTGLCRFGATCRFNHPP 47
                     5789*********************97 PP

2zf-CCCH39.87.4e-136792227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                     ++++C+++++tGtCk+G++C+F+H++
  Medtr7g079840.4 67 GQPECQYYLKTGTCKFGATCRFHHPK 92
                     5799********************96 PP

3zf-CCCH36.77.2e-12114138327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C +++rtG+Ck+G++CkF+H++
  Medtr7g079840.4 114 ESECAYYLRTGQCKFGNTCKFHHPQ 138
                      679********************97 PP

4zf-CCCH38.61.8e-12270295227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+f+++tG Ck+G+ C+F+H++
  Medtr7g079840.4 270 DQPECQFYMKTGDCKFGAVCRFHHPR 295
                      689*********************96 PP

5zf-CCCH38.22.4e-12315341127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++lC f++r+G+Ck+G++CkF H++
  Medtr7g079840.4 315 PGEPLCVFYSRYGICKFGPSCKFDHPM 341
                      589**********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-42047IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9762148IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-82247IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-52548IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-42646IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.4886593IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-66592IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-106892IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-66994IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-47191IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878111139IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4111138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6112139IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9114138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4117137IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-5268295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.624268296IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-9270295IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.52E-5271296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4274296IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821314342IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7314341IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-9316341IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5317341IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4319339IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MWQMSLRPSE TMESGPYPEH PGEPDCSYYI RTGLCRFGAT CRFNHPPNRK LAIATARMKG  60
EFPERLGQPE CQYYLKTGTC KFGATCRFHH PKDKAGVAGR VALNILGYPL RPNESECAYY  120
LRTGQCKFGN TCKFHHPQPS NMVLPMRGSP VYPTVQSPTT AGQQSYAAGI TNWSTSSYIP  180
SPRWQGPSSY APLILPQGVV SVPGWSTYNG QMGSDSPQQT MRNDQTYGTS HQGDPENAGL  240
QGVYSQYRSG SVPVGFYALQ RENIFPERPD QPECQFYMKT GDCKFGAVCR FHHPRERTIP  300
APDCVLSPLG LPLRPGEPLC VFYSRYGICK FGPSCKFDHP MGIFTYNVSA SPLAEAAGRR  360
LLGSSSGTAA LSLSSEGLVE SGSVKPRRLS LSETRPNPSG DDDIDDEG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.106250.0leaf| pod| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g079840.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6241380.0EU624138.1 Medicago sativa zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003624157.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLG7KRG60.0G7KRG6_MEDTR; Zinc finger CCCH domain protein
STRINGAES803750.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-162zinc finger protein 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]