PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g079840.4 | ||||||||
Common Name | MTR_7g079840 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | C3H | ||||||||
Protein Properties | Length: 409aa MW: 44857.5 Da PI: 8.2279 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.7 | 1.4e-11 | 21 | 47 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p Medtr7g079840.4 21 PGEPDCSYYIRTGLCRFGATCRFNHPP 47 5789*********************97 PP | |||||||
2 | zf-CCCH | 39.8 | 7.4e-13 | 67 | 92 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++C+F+H++ Medtr7g079840.4 67 GQPECQYYLKTGTCKFGATCRFHHPK 92 5799********************96 PP | |||||||
3 | zf-CCCH | 36.7 | 7.2e-12 | 114 | 138 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ Medtr7g079840.4 114 ESECAYYLRTGQCKFGNTCKFHHPQ 138 679********************97 PP | |||||||
4 | zf-CCCH | 38.6 | 1.8e-12 | 270 | 295 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ C+F+H++ Medtr7g079840.4 270 DQPECQFYMKTGDCKFGAVCRFHHPR 295 689*********************96 PP | |||||||
5 | zf-CCCH | 38.2 | 2.4e-12 | 315 | 341 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ Medtr7g079840.4 315 PGEPLCVFYSRYGICKFGPSCKFDHPM 341 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.2E-4 | 20 | 47 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.976 | 21 | 48 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.0E-8 | 22 | 47 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-5 | 25 | 48 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.6E-4 | 26 | 46 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.488 | 65 | 93 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.0E-6 | 65 | 92 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.5E-10 | 68 | 92 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-6 | 69 | 94 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-4 | 71 | 91 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.878 | 111 | 139 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-4 | 111 | 138 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-6 | 112 | 139 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-9 | 114 | 138 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 117 | 137 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.0E-5 | 268 | 295 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.624 | 268 | 296 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.7E-9 | 270 | 295 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.52E-5 | 271 | 296 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-4 | 274 | 296 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.821 | 314 | 342 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-7 | 314 | 341 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.4E-9 | 316 | 341 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 317 | 341 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.4E-4 | 319 | 339 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MWQMSLRPSE TMESGPYPEH PGEPDCSYYI RTGLCRFGAT CRFNHPPNRK LAIATARMKG 60 EFPERLGQPE CQYYLKTGTC KFGATCRFHH PKDKAGVAGR VALNILGYPL RPNESECAYY 120 LRTGQCKFGN TCKFHHPQPS NMVLPMRGSP VYPTVQSPTT AGQQSYAAGI TNWSTSSYIP 180 SPRWQGPSSY APLILPQGVV SVPGWSTYNG QMGSDSPQQT MRNDQTYGTS HQGDPENAGL 240 QGVYSQYRSG SVPVGFYALQ RENIFPERPD QPECQFYMKT GDCKFGAVCR FHHPRERTIP 300 APDCVLSPLG LPLRPGEPLC VFYSRYGICK FGPSCKFDHP MGIFTYNVSA SPLAEAAGRR 360 LLGSSSGTAA LSLSSEGLVE SGSVKPRRLS LSETRPNPSG DDDIDDEG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.10625 | 0.0 | leaf| pod| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g079840.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU624138 | 0.0 | EU624138.1 Medicago sativa zinc finger protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003624157.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | G7KRG6 | 0.0 | G7KRG6_MEDTR; Zinc finger CCCH domain protein | ||||
STRING | AES80375 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-162 | zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g079840.4 |
Entrez Gene | 11410286 |
Publications ? help Back to Top | |||
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