PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g079840.1
Common NameMTR_7g079840
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 419aa    MW: 46005.8 Da    PI: 7.8802
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g079840.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.5e-113157127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                     ++++ C+++ rtG C++G++C+F+H+p
  Medtr7g079840.1 31 PGEPDCSYYIRTGLCRFGATCRFNHPP 57
                     5789*********************97 PP
2zf-CCCH39.87.6e-1377102227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+++++tGtCk+G++C+F+H++
  Medtr7g079840.1  77 GQPECQYYLKTGTCKFGATCRFHHPK 102
                      5799********************96 PP
3zf-CCCH36.67.4e-12124148327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C +++rtG+Ck+G++CkF+H++
  Medtr7g079840.1 124 ESECAYYLRTGQCKFGNTCKFHHPQ 148
                      679********************97 PP
4zf-CCCH38.61.8e-12280305227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+f+++tG Ck+G+ C+F+H++
  Medtr7g079840.1 280 DQPECQFYMKTGDCKFGAVCRFHHPR 305
                      689*********************96 PP
5zf-CCCH38.22.5e-12325351127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++lC f++r+G+Ck+G++CkF H++
  Medtr7g079840.1 325 PGEPLCVFYSRYGICKFGPSCKFDHPM 351
                      589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-43057IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9763158IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-83257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-53558IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-43656IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-675102IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.48875103IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-1078102IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-679104IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-481101IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4121148IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878121149IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6122149IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9124148IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4127147IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-5278305IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.624278306IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-9280305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5281306IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4284306IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7324351IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821324352IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-9326351IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5327351IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-4329349IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MEYDAIPQEA MWQMSLRPSE TMESGPYPEH PGEPDCSYYI RTGLCRFGAT CRFNHPPNRK  60
LAIATARMKG EFPERLGQPE CQYYLKTGTC KFGATCRFHH PKDKAGVAGR VALNILGYPL  120
RPNESECAYY LRTGQCKFGN TCKFHHPQPS NMVLPMRGSP VYPTVQSPTT AGQQSYAAGI  180
TNWSTSSYIP SPRWQGPSSY APLILPQGVV SVPGWSTYNG QMGSDSPQQT MRNDQTYGTS  240
HQGDPENAGL QGVYSQYRSG SVPVGFYALQ RENIFPERPD QPECQFYMKT GDCKFGAVCR  300
FHHPRERTIP APDCVLSPLG LPLRPGEPLC VFYSRYGICK FGPSCKFDHP MGIFTYNVSA  360
SPLAEAAGRR LLGSSSGTAA LSLSSEGLVE SGSVKPRRLS LSETRPNPSG DDDIDDEG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.106250.0leaf| pod| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g079840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6241380.0EU624138.1 Medicago sativa zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003624157.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLG7KRG60.0G7KRG6_MEDTR; Zinc finger CCCH domain protein
STRINGAES803750.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-164zinc finger protein 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]