PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g076840.1 | ||||||||
Common Name | MTR_7g076840 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 252aa MW: 28427.3 Da PI: 4.6555 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.6 | 2.6e-09 | 125 | 154 | 2 | 30 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.a 30 +++ + +ErrRR+r+N++++ Lr+++Pk + Medtr7g076840.1 125 KAKSKRVERRRRKRLNDRLSMLRSIVPKiS 154 6777899********************955 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.23E-8 | 122 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.578 | 123 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-7 | 123 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.7E-7 | 124 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 2.73E-4 | 180 | 221 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MELGFLEELL APRKDTWNTL SNGLNELLLP NGWTFDSFDE NLLINPSLNP SFASFSTPLD 60 HRFECPYGTD FDDSAPLLPQ QESIEEFGFV GSENKSLEQS KISCKVEEQV SETPVFNMGL 120 CDEKKAKSKR VERRRRKRLN DRLSMLRSIV PKISKINILG ISKELKPNEV MFDVEREQDT 180 RISICCATKP GLLLSTVNTL EALGLEIHQC VISSFNDFSL QASCSEVSNC ITACSDGYRI 240 WQNYTVSLSF Y* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 138 | KKAKSKRVERRRRKRL |
2 | 131 | 138 | ERRRRKRL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.1394 | 1e-111 | root| seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g076840.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC123899 | 1e-140 | AC123899.15 Medicago truncatula clone mth2-33n6, complete sequence. | |||
GenBank | AC159144 | 1e-140 | AC159144.4 Medicago truncatula chromosome 7 clone mth2-41a4, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013453691.1 | 1e-137 | transcription factor bHLH93 isoform X2 | ||||
TrEMBL | G7L3K2 | 0.0 | G7L3K2_MEDTR; Transcription factor bHLH93-like protein, putative | ||||
STRING | AES80122 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1186 | 34 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 2e-24 | beta HLH protein 93 |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g076840.1 |
Entrez Gene | 11427503 |
Publications ? help Back to Top | |||
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