PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr7g076080.1

Common Name

MTR_7g076080

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

HD-ZIP

Protein Properties

Length: 779aa MW: 85731.5 Da PI: 6.6691

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr7g076080.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.6	6.6e-21	92	147	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r eL+k+l L++rqVk+WFqNrR+++k Medtr7g076080.1 92 KKRYHRHTPQQIQELESMFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 147 688999***********************************************999 PP
2	START	204	6.1e-64	291	517	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla....k 78 ela++a++elvk+a+ +ep+W +s+ e+ n +e+++++++ + +ea+r+sgvv+ ++ lve+l+d++ +W+e+++ + Medtr7g076080.1 291 ELALAAMDELVKMAQTNEPLWIRSVesgkEIFNHEEYTRIIST--PciglkpngFVSEASRESGVVIINSLALVETLMDSN-RWSEMFPcviaR 381 5899*******************999988899999999955..3458999999**********************.******** PP EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEE CS START 79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskv 164 +t+evissg galqlm+aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d ++ + + + +++lpSg+++++++ng+skv Medtr7g076080.1 382 SSTTEVISSGingtrnGALQLMQAELQVLSPLVPvREVSFLRFCKQHAEGVWAVVDVSIDTIRETSAgAPTFLTCRRLPSGCVVQDMPNGYSKV 475 ************************************************************9999********************** PP EEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 165 twvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 twveh++++++++h+l+r+l++ g+ +ga++wvatlqrqce+ Medtr7g076080.1 476 TWVEHAEYEESQVHQLYRPLLSLGMGFGAQRWVATLQRQCEC 517 **************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.55E-21	75	149	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.2E-22	84	149	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.297	89	149	IPR001356	Homeobox domain
SMART	SM00389	9.5E-18	90	153	IPR001356	Homeobox domain
CDD	cd00086	1.74E-18	91	149	No hit	No description
Pfam	PF00046	2.0E-18	92	147	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	124	147	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	45.284	282	520	IPR002913	START domain
SuperFamily	SSF55961	5.33E-35	283	517	No hit	No description
CDD	cd08875	8.15E-120	286	516	No hit	No description
Pfam	PF01852	5.0E-56	291	517	IPR002913	START domain
SMART	SM00234	5.0E-50	291	517	IPR002913	START domain
SuperFamily	SSF55961	3.35E-23	539	762	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 779 aa Download sequence Send to blast
MPSSAISQPR LSTPTLVKSM FNSSGLSLAL QTNLEAQGGD MKRLMAENFH QTNNGLRRNR 60 EEEEHESCRS GSDNMDGISG DDFDAADNPP RKKRYHRHTP QQIQELESMF KECPHPDEKQ 120 RLELSKRLCL ETRQVKFWFQ NRRTQMKTQL ERHENSLLRQ ANDKLRAENM SIREAMRNPM 180 CSNCGGPAII SEISLEEQHL RIENARLKDE LDRVCTLAGK FLGRPITSLP NSSLEIGFVG 240 LNNTLPSTMP LGQDFGMVSM SPPSITRGTS MVTNTNSNGF DRSMERSMFL ELALAAMDEL 300 VKMAQTNEPL WIRSVESGKE IFNHEEYTRI ISTPCIGLKP NGFVSEASRE SGVVIINSLA 360 LVETLMDSNR WSEMFPCVIA RSSTTEVISS GINGTRNGAL QLMQAELQVL SPLVPVREVS 420 FLRFCKQHAE GVWAVVDVSI DTIRETSAGA PTFLTCRRLP SGCVVQDMPN GYSKVTWVEH 480 AEYEESQVHQ LYRPLLSLGM GFGAQRWVAT LQRQCECLAI LMSSSLPSRE HSAISAGGRR 540 SMLKLAHRMT NNFCAGVCAS TVHKWNKLNA GNVGEDVRVM TRKSVDDPGE PPGIVLSAAT 600 SVWLPASPQK VFDFLRNEKL RSEWDILSNG GPMQEMAHIA KGHDHGNCVS LLRASAINSS 660 QSSMLILQET STDASGSLVV YAPVDIPAMH VVMNGGDSAY VALLPSGFAV LPDGHSNGSG 720 NHEDASQPRV SGSLLTVAFQ ILVNSLPTAK LTVESVETVN NLISCTIQKI KVALQCES*

Sequence ? help Back to Top

Protein Sequence Length: 779 aa Download sequence Send to blast

MPSSAISQPR LSTPTLVKSM FNSSGLSLAL QTNLEAQGGD MKRLMAENFH QTNNGLRRNR  60
EEEEHESCRS GSDNMDGISG DDFDAADNPP RKKRYHRHTP QQIQELESMF KECPHPDEKQ  120
RLELSKRLCL ETRQVKFWFQ NRRTQMKTQL ERHENSLLRQ ANDKLRAENM SIREAMRNPM  180
CSNCGGPAII SEISLEEQHL RIENARLKDE LDRVCTLAGK FLGRPITSLP NSSLEIGFVG  240
LNNTLPSTMP LGQDFGMVSM SPPSITRGTS MVTNTNSNGF DRSMERSMFL ELALAAMDEL  300
VKMAQTNEPL WIRSVESGKE IFNHEEYTRI ISTPCIGLKP NGFVSEASRE SGVVIINSLA  360
LVETLMDSNR WSEMFPCVIA RSSTTEVISS GINGTRNGAL QLMQAELQVL SPLVPVREVS  420
FLRFCKQHAE GVWAVVDVSI DTIRETSAGA PTFLTCRRLP SGCVVQDMPN GYSKVTWVEH  480
AEYEESQVHQ LYRPLLSLGM GFGAQRWVAT LQRQCECLAI LMSSSLPSRE HSAISAGGRR  540
SMLKLAHRMT NNFCAGVCAS TVHKWNKLNA GNVGEDVRVM TRKSVDDPGE PPGIVLSAAT  600
SVWLPASPQK VFDFLRNEKL RSEWDILSNG GPMQEMAHIA KGHDHGNCVS LLRASAINSS  660
QSSMLILQET STDASGSLVV YAPVDIPAMH VVMNGGDSAY VALLPSGFAV LPDGHSNGSG  720
NHEDASQPRV SGSLLTVAFQ ILVNSLPTAK LTVESVETVN NLISCTIQKI KVALQCES*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269\|PubMed:10402424}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr7g076080.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC148764	0.0	AC148764.16 Medicago truncatula clone mth2-30o12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003623826.1	0.0	homeobox-leucine zipper protein ANTHOCYANINLESS 2
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	G7L2F0	0.0	G7L2F0_MEDTR; Homeobox leucine zipper protein
STRING	AES80044	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1192	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Medtr7g076080.1
Entrez Gene	11431643

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]