PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g074915.1 | ||||||||
Common Name | MTR_7g074915 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LBD | ||||||||
Protein Properties | Length: 125aa MW: 14102.8 Da PI: 6.3705 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 25.1 | 5e-08 | 62 | 86 | 1 | 24 |
DUF260 1 aCaaCkvlrrkCakd.Cvlapyfpa 24 +CaaCk+lrr+C+ d C+la yfp Medtr7g074915.1 62 PCAACKILRRRCTVDkCALASYFPP 86 7***********8655*******95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 9.042 | 61 | 124 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-6 | 62 | 86 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MDSSTILNQL FSTIQVFNWL IDYEIEISSS TDFFLQLCGA RFPDFFLDRF LPGPPQVVVM 60 SPCAACKILR RRCTVDKCAL ASYFPPILIL PSLPLLIEFL VLATLKLKMN NIEKLNLIIS 120 INNM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g074915.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC149268 | 1e-55 | AC149268.21 Medicago truncatula clone mth2-94j16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A072UBV4 | 2e-83 | A0A072UBV4_MEDTR; DUF260 family protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 4e-09 | LOB domain-containing protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g074915.1 |
Entrez Gene | 25498871 |
Publications ? help Back to Top | |||
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