PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g074650.1
Common NameMTR_7g074650, MtrDRAFT_AC155890g4v2
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 806aa    MW: 89030.2 Da    PI: 6.5643
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g074650.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS413.22.3e-1264367922374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                       +lLl+cAeavs+++le+a+++L ++s+l++p g++ qR+aayf eA++arl++s+ ++y++lpp + +    +++++a+++f+ +sP++kfsh
  Medtr7g074650.1 436 LTLLLQCAEAVSAENLEQANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPPHTLH---NQKVASAFQVFNGISPFVKFSH 526
                      579*****************************************************************9...7889999*************** PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      +taNqaI ea+++eervHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s e+le+tg+rL++fA++lg+pfef + va+++ ++
  Medtr7g074650.1 527 FTANQAIQEAFDREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGT----SMETLEATGKRLSDFASKLGLPFEFFP-VAEKVGNI 615
                      ******************************************************....***************************.7******* PP

             GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                      ++e+L+v++ Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++ n++sFl rf+ea++yysalfdsl +++++eseer+
  Medtr7g074650.1 616 DVEKLNVSKSEAVAVHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLS-NAGSFLGRFVEAIHYYSALFDSLGSSYGEESEERH 702
                      ******************9..999999999999....*******************97.699******************************** PP

             GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +vE++ll+rei+nv+a  g +r  + + +++Wre+l+++GF+ ++l  +aa+qa+lll +++s+gy++ e++g l lgWkd  L+++SaWr
  Medtr7g074650.1 703 VVEQQLLSREIRNVLAVGGPSRSGEIK-FHNWREKLQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWR 792
                      *********************888776.**************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.886409772IPR005202Transcription factor GRAS
PfamPF035148.0E-124436792IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0031514Cellular Componentmotile cilium
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 806 aa     Download sequence    Send to blast
MAACALFNGA TTDETNNNSA SNSSNISSED LHTLHNSNTN MPQQQQPHSD RKVLRKRMAS  60
EMELQLQVHN NNNRFSRRNN NNISSLNCSL PSSTEKGVTT TTTTTLAAGT NNNANNNNFH  120
YNTNNINNSS HHSNVALSRD NVAVQNYPTV TVTTNYSTML LPSSSNNLNN SSTSNYAHFQ  180
QPLVEEQNHV PNICGFSGLP LFPSQNQPNR TSNRNSNSNI SSATNIVDVV NSSTPSMMDE  240
TSATTNWIDG ILKDLIHTSN SVSIPQLINN VREIIYPCNP NLALVLEHRL RLLTETAPSV  300
VPERKRNNTE QQSVSNVNVL PASNVNSSVK LMNRVDDIVP HFSDSSTLLN QNQNMFPNWG  360
VPQINNNNNP LVTLPSQPQS TQQDQHQHQQ HQEHQEDLVP ATTPPPPTSA ELAITRKKKE  420
EIKEQKKKDE EGLHLLTLLL QCAEAVSAEN LEQANKMLLE ISQLSTPFGT SAQRVAAYFS  480
EAISARLVSS CLGIYATLPP HTLHNQKVAS AFQVFNGISP FVKFSHFTAN QAIQEAFDRE  540
ERVHIIDLDI MQGLQWPGLF HILASRPGGP PYVRLTGLGT SMETLEATGK RLSDFASKLG  600
LPFEFFPVAE KVGNIDVEKL NVSKSEAVAV HWLQHSLYDV TGSDTNTLWL LQRLAPKVVT  660
VVEQDLSNAG SFLGRFVEAI HYYSALFDSL GSSYGEESEE RHVVEQQLLS REIRNVLAVG  720
GPSRSGEIKF HNWREKLQQC GFRGISLAGN AATQASLLLG MFPSEGYTLV EDNGILKLGW  780
KDLCLLTASA WRPPFHTNNI IPHHN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.04187933380Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.12320.0root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoot apical meristem, leaf primordia, between the cortex and the differentiating vessels in lower shoots and in root endodermis. {ECO:0000269|PubMed:11333309}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g074650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1558900.0AC155890.2 Medicago truncatula chromosome 7 clone mth2-49p3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003623699.10.0protein SCARECROW
SwissprotQ9AVK40.0SCR_PEA; Protein SCARECROW
TrEMBLA2Q3V80.0A2Q3V8_MEDTR; Flagellar basal body rod protein; GRAS transcription factor
STRINGAES799170.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]