PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g070643.1 | ||||||||
Common Name | MTR_7g070643 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ZF-HD | ||||||||
Protein Properties | Length: 185aa MW: 21164.4 Da PI: 11.0057 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 57.7 | 2.8e-18 | 79 | 120 | 3 | 45 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaA 45 ++rY eC+kNhA+s GghavDGC+Ef+++ geegt + CaA Medtr7g070643.1 79 TMRYLECQKNHAVSFGGHAVDGCCEFIAA-GEEGTLEVAICAA 120 79**************************9.9999*******99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.6E-16 | 80 | 120 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.5E-15 | 81 | 120 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-10 | 81 | 126 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 20.073 | 82 | 131 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MSSNPLMNDH HMIFLFFLHL LPSISSSSSI FIHLYAHLNP EHLYSFKLKS YYDNKSSRSK 60 LTVVVDGRKG NGNGGFVSTM RYLECQKNHA VSFGGHAVDG CCEFIAAGEE GTLEVAICAA 120 WRIQNSGIRI LIPPSCFCVV VIYGFWKKKK KKKKKKKKKK KKKKKKKKKK KKKKKKKKKK 180 KKKR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 169 | 183 | KKKKKKKKKKKKKKR |
2 | 170 | 183 | KKKKKKKKKKKKKR |
3 | 173 | 182 | KKKKKKKKKK |
4 | 175 | 183 | KKKKKKKKR |
5 | 177 | 183 | KKKKKKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g070643.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC148291 | 1e-141 | AC148291.22 Medicago truncatula clone mth2-14n3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A072U0M5 | 1e-128 | A0A072U0M5_MEDTR; ZF-HD protein dimerization region protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50890.1 | 6e-15 | homeobox protein 28 |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g070643.1 |
Entrez Gene | 25498802 |
Publications ? help Back to Top | |||
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